PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G102400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 313aa    MW: 35944.5 Da    PI: 9.7576
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G102400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.75.6e-1527111190
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                        f+k+  +s++ +   l +pkkf++++g+    s +++l+ +    W+v+l  rk +g   +++GWkeFv+   +++g  +vF+++++s+f
  Aqcoe2G102400.1.p  27 FCKII-SSSTIADEKLGIPKKFLTRYGKY--MSNDVVLKVRGCMAWRVEL--RKVDGFACFQNGWKEFVEHYSICAGHYLVFRYNKKSQF 111
                        55555.778888888***********855..6779***************..********************************988777 PP
2B334.82.8e-11192286197
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                        ffk+++++++ + +   +p+ f +++  +    +   l+l+ ++g ++W v + y  ++    ++kG + F  +n+++ gD++ F+l+++++
  Aqcoe2G102400.1.p 192 FFKITMQPSYVNARYWPIPRIFSDKYlpE----GLESLSLQVPNGkNKWIVGC-YLYRGTDLRMSKGLSLFMLENNIQIGDVCYFELIKKKN 278
                        7888888888878889*******999442....445799***99989******.666666799*************************9888 PP

                        E..EEEEE CS
                 B3  90 felvvkvf 97 
                          l+v+v+
  Aqcoe2G102400.1.p 279 VVLKVSVI 286
                        87888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.6E-2321119IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.08E-2022119IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-1325116No hitNo description
PROSITE profilePS5086312.32326119IPR003340B3 DNA binding domain
PfamPF023627.2E-1227111IPR003340B3 DNA binding domain
SMARTSM010191.4E-1127119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15186288IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-15188287IPR015300DNA-binding pseudobarrel domain
CDDcd100173.48E-10191286No hitNo description
PfamPF023621.9E-9192286IPR003340B3 DNA binding domain
PROSITE profilePS508639.277192289IPR003340B3 DNA binding domain
SMARTSM010190.0015192289IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRNPCGRRHK CKRSEEQQDK EEDLPSFCKI ISSSTIADEK LGIPKKFLTR YGKYMSNDVV  60
LKVRGCMAWR VELRKVDGFA CFQNGWKEFV EHYSICAGHY LVFRYNKKSQ FGVIIFGLSG  120
NEIDYSRSSN NLGEFNHVKH APLPENEGRD GNVNPMQTDS SGRDLMTRRL VKTEERKVAI  180
QITSPFMSKY PFFKITMQPS YVNARYWPIP RIFSDKYLPE GLESLSLQVP NGKNKWIVGC  240
YLYRGTDLRM SKGLSLFMLE NNIQIGDVCY FELIKKKNVV LKVSVIGSQM EKLCNEQLNH  300
VKNGCPGKTS QK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A2e-1516828624140B3 domain-containing transcription factor VRN1
4i1k_B2e-1516828624140B3 domain-containing transcription factor VRN1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5DIM11e-169A0A2G5DIM1_AQUCA; Uncharacterized protein
STRINGAquca_019_00028.11e-169(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.17e-41B3 family protein