PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G102500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 816aa    MW: 94057.2 Da    PI: 8.5583
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G102500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.25.5e-17371191098
                        HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                 B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        +++ +rl++p  f++++g +   s  ++l+ +sg++W v++  +   gr++l+kGW  Fv+ + + +g f+vFk++g+s+f  +v +++
  Aqcoe2G102500.1.p  37 HSSDRRLSIPHMFTRNFGRE--WSDFIVLKVPSGKEWHVEI--SEEEGRVWLQKGWDAFVDYHSISVGHFLVFKYNGNSQF--NVVICD 119
                        456678********888754..45589**************..**********************************9**9..777776 PP
2B351.32e-16466556398
                        EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++ ps+v+ + rl lp  fa+++ + +  +  ++tl  ++gr+W +++  + ++ ++ l++GWk Fv +n+L + D+++F+l++r+  +l+
  Aqcoe2G102500.1.p 466 VTMRPSYVHGRLRLNLPQWFARAYlKDV--Q--DVTLWVPDGRVWPIQC--SLGDFHVKLSTGWKAFVLDNQLAVDDICIFELVDRKLMKLK 551
                        46889*******************5433..4..7***************..8888889**************************9999999* PP

                        EEEE- CS
                 B3  94 vkvfr 98 
                        v++fr
  Aqcoe2G102500.1.p 552 VSIFR 556
                        ***98 PP
3B351.91.4e-16592682398
                        EE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                         ++ ps+v+++ +l +p  fa+++ + +  ++  +tl  ++gr+W v++    ++  + l++GWk Fv +n+L + D+++F+l++r+ ++l+
  Aqcoe2G102500.1.p 592 VTMRPSYVHSNFLLNFPIWFARTYlK-D-VQG--VTLWVPDGRVWPVRC--ALGDYFVKLSTGWKAFVLDNQLAVDDICIFELVDRKLRKLK 677
                        56889*******************43.3.355..99999**********..88888999*************************99****** PP

                        EEEE- CS
                 B3  94 vkvfr 98 
                        v++fr
  Aqcoe2G102500.1.p 678 VSIFR 682
                        ***97 PP
4B351.32.1e-16725814598
                        -..-HHHHT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                 B3   5 ltpsdvlks.grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                        + ps+v ++ + + lp++fa+e+ ++      ++l+ +++ +W v++    + +r+ l+kGW  Fv++n+Lke D+++F+l+ ++   l+v+
  Aqcoe2G102500.1.p 725 MQPSYVRTThAKVNLPRRFAKEYLKDAFH--SVILRVSNSGKWYVQC--HVG-DRCKLSKGWGTFVEDNHLKEDDVCIFELVYKNPIVLNVT 811
                        44555555457889*********655333..6***************..433.4667***********************997778888999 PP

                        EE- CS
                 B3  96 vfr 98 
                        +fr
  Aqcoe2G102500.1.p 812 IFR 814
                        987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.1E-2328120IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.3828121IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-2030119IPR015300DNA-binding pseudobarrel domain
CDDcd100176.20E-1831119No hitNo description
SMARTSM010199.4E-1532121IPR003340B3 DNA binding domain
PfamPF023624.3E-1537119IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-21455556IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.59E-19459556IPR015300DNA-binding pseudobarrel domain
CDDcd100178.89E-19462556No hitNo description
PROSITE profilePS5086312.041464558IPR003340B3 DNA binding domain
SMARTSM010198.0E-14464558IPR003340B3 DNA binding domain
PfamPF023621.3E-14466556IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.9E-20581682IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.51E-20583682IPR015300DNA-binding pseudobarrel domain
CDDcd100171.16E-18588682No hitNo description
PROSITE profilePS5086311.505590684IPR003340B3 DNA binding domain
SMARTSM010194.3E-12590684IPR003340B3 DNA binding domain
PfamPF023626.3E-15592682IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.7E-21714814IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.89E-19715814IPR015300DNA-binding pseudobarrel domain
CDDcd100172.85E-15719814No hitNo description
SMARTSM010195.8E-6721815IPR003340B3 DNA binding domain
PROSITE profilePS5086312.464722815IPR003340B3 DNA binding domain
PfamPF023623.0E-14725814IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MNQTKSNIVT MERSPQIKVE ECNQRREKGL YFFKIIHSSD RRLSIPHMFT RNFGREWSDF  60
IVLKVPSGKE WHVEISEEEG RVWLQKGWDA FVDYHSISVG HFLVFKYNGN SQFNVVICDM  120
RASEIEYPCD ATNSKESDDR TGSQTSKQCN QEEDIIEILD LCPPKQVVDQ FQDHKTRKHC  180
RSTTHQSCFS LQSIATTKKR VATTSNFDLA FYEQRTKISR NGSSCLLKNT EKQDGDTEEK  240
RRYLVRKEKK GIEQVGNDDV HFKAEKVAED DLFGVNCRSY KEPTMFTPTK FMCTSDIGSD  300
EQDCDPCAQF VERPIAFIHD RGTEVVHNGC EVFGSIFKDI SKGGPIDFDC VNIHEQTSSR  360
PPGLTLKECS SRDSHQMKNM EGLRESASFP YSNVQLHVRN SKKSKIVEAD IYCSKKEVRK  420
RNSSNLQPKQ QTELVPLLRT PVSFHVRERS IAEASAFTSE NPFCTVTMRP SYVHGRLRLN  480
LPQWFARAYL KDVQDVTLWV PDGRVWPIQC SLGDFHVKLS TGWKAFVLDN QLAVDDICIF  540
ELVDRKLMKL KVSIFRVHLN STQGKASIDR RLATNLEKEA SAFTSENPFC TVTMRPSYVH  600
SNFLLNFPIW FARTYLKDVQ GVTLWVPDGR VWPVRCALGD YFVKLSTGWK AFVLDNQLAV  660
DDICIFELVD RKLRKLKVSI FRFHQNSTQE KASIDRRLAT NLEKDRKMVP TRTFTSANPF  720
CTVEMQPSYV RTTHAKVNLP RRFAKEYLKD AFHSVILRVS NSGKWYVQCH VGDRCKLSKG  780
WGTFVEDNHL KEDDVCIFEL VYKNPIVLNV TIFRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A1e-1744281418144B3 domain-containing transcription factor VRN1
4i1k_B1e-1744281418144B3 domain-containing transcription factor VRN1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-22B3 family protein