PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G113900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 241aa    MW: 27249.1 Da    PI: 7.4198
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G113900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding452.5e-14127171347
                        SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
    Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                        +WT+eE++l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  Aqcoe2G113900.1.p 127 PWTEEEHKLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 171
                        8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.6022478IPR017884SANT domain
SMARTSM007173.6E-72577IPR001005SANT/Myb domain
SuperFamilySSF466897.33E-112782IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-42879IPR009057Homeodomain-like
CDDcd001671.03E-52975No hitNo description
PROSITE profilePS5129419.525120176IPR017930Myb domain
SuperFamilySSF466893.11E-16121176IPR009057Homeodomain-like
TIGRFAMsTIGR015579.0E-17124174IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.607.7E-13124173IPR009057Homeodomain-like
SMARTSM007173.1E-11124174IPR001005SANT/Myb domain
CDDcd001671.04E-9127172No hitNo description
PfamPF002495.4E-12127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MIPDNFYHHL MTPTSSSSLQ SISSSSSSWN RVQDKQFENG LVMYSEETPN RWEKIASHVE  60
GKTSLEVEQH YQLLIDDVKA IEAGLVELPS YTDDQLIHHR DTNNNSQISF GSKSKTSSET  120
ERRKGTPWTE EEHKLFLIGL QKYGKGDWRS ISRNAVVSRT PTQVASHAQK YFNRINSDKK  180
EKKRSSIHDI TVDEASLVQA NNQNTIVPVI DRSQQNMGAS NTQSSYPNHG GAYQGFRFPM  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-171991173RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002523835.12e-80transcription factor SRM1
SwissprotQ8S9H73e-58DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2G5EU061e-179A0A2G5EU06_AQUCA; Uncharacterized protein
STRINGAquca_004_00257.11e-180(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.16e-67MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]