PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G124400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 365aa MW: 39245.2 Da PI: 4.1863

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G124400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.3	5.9e-05	339	360	3	23
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 C+ C+k+F++ s L++H + H Aqcoe2G124400.1.p 339 CKSCSKTFNSDSGLQSHTKAkH 360 *****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	11.365	337	364	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	339	360	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MASFWGVEVK AGVPLRVKAG KANFVKISQA ALGEAKGKQN ESIRLFLNVN GQKLVIGTLI 60 PGEVSQISYD MLMDIDFELS HNWKNGSIYF CGYQPMPSDE SDDDTDSDLG ELPVIAKENG 120 KPEPAGEKSN PTTENAVAKS KVTIAEPKKG DDTSEDDDED SDEDSDDDDE SESQEEKPSL 180 TSEKAAAKSK VAAKSKVTIV EPKKGDNTSD DDDEDSDEDS DEDDESESQD GQMDVSGEDS 240 SDEDDGSSDE DDTGSDEQDE SSEEEDEDTP KKGKKRPAEA SIKTPVPEKK AKFVTPQKTD 300 IKKAVEHIAT PHPKKAGKTP ANNDKSKQQT PKSSGQVACK SCSKTFNSDS GLQSHTKAKH 360 SDGK*

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MASFWGVEVK AGVPLRVKAG KANFVKISQA ALGEAKGKQN ESIRLFLNVN GQKLVIGTLI  60
PGEVSQISYD MLMDIDFELS HNWKNGSIYF CGYQPMPSDE SDDDTDSDLG ELPVIAKENG  120
KPEPAGEKSN PTTENAVAKS KVTIAEPKKG DDTSEDDDED SDEDSDDDDE SESQEEKPSL  180
TSEKAAAKSK VAAKSKVTIV EPKKGDNTSD DDDEDSDEDS DEDDESESQD GQMDVSGEDS  240
SDEDDGSSDE DDTGSDEQDE SSEEEDEDTP KKGKKRPAEA SIKTPVPEKK AKFVTPQKTD  300
IKKAVEHIAT PHPKKAGKTP ANNDKSKQQT PKSSGQVACK SCSKTFNSDS GLQSHTKAKH  360
SDGK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	269	276	PKKGKKRP

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5DIK8	0.0	A0A2G5DIK8_AQUCA; Uncharacterized protein
STRING	Aquca_019_00033.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03740.1	4e-25	histone deacetylase 2C

Link Out ? help Back to Top
Phytozome	Aqcoe2G124400.1.p