PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G129900.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GRF
Protein Properties Length: 245aa    MW: 27370 Da    PI: 8.7182
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G129900.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.33.7e-25148192145
                WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                        d+epgrCrRtDGKkWRCsr+v++ +k+CErH+hrgr+rsrk +e+
  Aqcoe2G129900.2.p 148 DPEPGRCRRTDGKKWRCSREVVPAHKYCERHVHRGRNRSRKLVET 192
                        79***************************************9986 PP
2QLQ53.57.1e-1976111237
                QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                         F+ aQ+q+L+ Q+l++Ky++a++PvP+eLl +i+k
  Aqcoe2G129900.2.p  76 LFSLAQWQELELQALIFKYMLAGAPVPAELLHPIKK 111
                        59********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009515.1E-1075111IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166620.51576111IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.3E-1477109IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.248148192IPR014977WRC domain
PfamPF088793.4E-21149191IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MDFDLKQWKN QQQHESEHDQ QPSAKIPRLL LEPPHHPSDV ASALPLFVPE PNSRMSNSLS  60
AFSDSTTTRF SGMGCLFSLA QWQELELQAL IFKYMLAGAP VPAELLHPIK KSLLTTPSAA  120
CYLYPFQQYQ HYQPTMLQSG YWGRNAVDPE PGRCRRTDGK KWRCSREVVP AHKYCERHVH  180
RGRNRSRKLV ETATPTAIEG DQKTPNPPAA LPITNASGTP FALSGSPPLA NLIQLNQRDD  240
SSNT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). {ECO:0000269|PubMed:15200956, ECO:0000269|PubMed:19453503, ECO:0000269|PubMed:20023165}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243928.11e-96PREDICTED: growth-regulating factor 3
SwissprotQ8L8A71e-60GRF4_ARATH; Growth-regulating factor 4
TrEMBLA0A2G5C1R50.0A0A2G5C1R5_AQUCA; Uncharacterized protein
STRINGAquca_122_00004.11e-177(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52910.13e-53growth-regulating factor 4
Publications ? help Back to Top
  1. Kuijt SJ, et al.
    Interaction between the GROWTH-REGULATING FACTOR and KNOTTED1-LIKE HOMEOBOX families of transcription factors.
    Plant Physiol., 2014. 164(4): p. 1952-66
    [PMID:24532604]
  2. Cao Y,Han Y,Jin Q,Lin Y,Cai Y
    Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa).
    Front Plant Sci, 2016. 7: p. 1750
    [PMID:27933074]