PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G133900.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 644aa MW: 74614.6 Da PI: 6.8804

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G133900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	35.9	2.5e-11	73	141	26	90
FAR1 26 geitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +++t+ +vCs g+ ++ ++ ++k+r ++++ r +C+a++k++ + + +w+v++++ eHnH+++ Aqcoe2G133900.1.p 73 DTVTTILYVCSHFGTYNKPVNEsvpKQKQRPNTSTMRGECQAQMKINPNPkTLEWVVMQFHDEHNHSFV 141 5688899*****9999888867666666677778899*****99899***********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.2E-8	73	141	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.4E-12	257	302	IPR018289	MULE transposase domain
PROSITE profile	PS50966	8.654	452	488	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 644 aa Download sequence Send to blast
MPTCLILTIP ERYCAMEEEV FASEKEKSLT VEFGSPSKDA NDTMMTPYIG MTFKTSEDAK 60 EYYEKYGTWV RCDTVTTILY VCSHFGTYNK PVNESVPKQK QRPNTSTMRG ECQAQMKINP 120 NPKTLEWVVM QFHDEHNHSF VSPSKKMLLK TNRKMPEAAK NMVEMFRKEN LPVNKVKSIF 180 GGDNIGFNNR ACWNHLRDVR QKIDVGDAQW AFEYFQKRQL ENPQFYYAIQ CDGEGRAVNF 240 FWVDARSRMS YQQFGDVVTF DTTYKTNKYK LPFAPFTGAN HHFQTIQFGC ALLQDETENS 300 FDMKKCLKKT FRVVDFEKSW GEVMIKYELT NNAWLEGLYK DRVVWVPVYN CTIFFDGMSS 360 TGRSEGINAF FKDYINSKTD LKEFVEKYEQ ALKMIEAKER DEDYESEQKY RLFVEKSYIL 420 YHISIDMYKS SVVSDDPNTH IVTYKRGDTD HWMVTMDQQT LEGTCECHLF EFIGISCTHI 480 LKSADKVEFI SQEQTKALRL NHLCQEATQW ACIAYKVEEG YKMFLDGIKE LGKMVSQIKQ 540 SKVDDGEAQV NGSINQPPQI FLDPHVSLTK GRNKDGKGNG NCSPTNNDER YKSLIEISED 600 KKKRKCTCCN TFANHNSRTC PKRLKVNDQG NTVINETFDL SCE*

Sequence ? help Back to Top

Protein Sequence Length: 644 aa Download sequence Send to blast

MPTCLILTIP ERYCAMEEEV FASEKEKSLT VEFGSPSKDA NDTMMTPYIG MTFKTSEDAK  60
EYYEKYGTWV RCDTVTTILY VCSHFGTYNK PVNESVPKQK QRPNTSTMRG ECQAQMKINP  120
NPKTLEWVVM QFHDEHNHSF VSPSKKMLLK TNRKMPEAAK NMVEMFRKEN LPVNKVKSIF  180
GGDNIGFNNR ACWNHLRDVR QKIDVGDAQW AFEYFQKRQL ENPQFYYAIQ CDGEGRAVNF  240
FWVDARSRMS YQQFGDVVTF DTTYKTNKYK LPFAPFTGAN HHFQTIQFGC ALLQDETENS  300
FDMKKCLKKT FRVVDFEKSW GEVMIKYELT NNAWLEGLYK DRVVWVPVYN CTIFFDGMSS  360
TGRSEGINAF FKDYINSKTD LKEFVEKYEQ ALKMIEAKER DEDYESEQKY RLFVEKSYIL  420
YHISIDMYKS SVVSDDPNTH IVTYKRGDTD HWMVTMDQQT LEGTCECHLF EFIGISCTHI  480
LKSADKVEFI SQEQTKALRL NHLCQEATQW ACIAYKVEEG YKMFLDGIKE LGKMVSQIKQ  540
SKVDDGEAQV NGSINQPPQI FLDPHVSLTK GRNKDGKGNG NCSPTNNDER YKSLIEISED  600
KKKRKCTCCN TFANHNSRTC PKRLKVNDQG NTVINETFDL SCE*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024164366.1	1e-138	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	7e-49	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe2G133900.1.p