PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G141900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 472aa    MW: 55182.6 Da    PI: 9.4057
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G141900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR146.99.3e-156821191
               FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91
                        F v+k+ skk  ++g+  +  f C ++gk+++++++   + ++++ ++t+C a+++v + +dg+w+vt +++eHnHel+p
  Aqcoe2G141900.1.p  6 RFPVKKKISKKG-DDGKHRWVMFACARSGKSKSNSRN---AFKKHPISKTNCGARVNVVLCTDGRWRVTLVHHEHNHELSP 82
                       688888877776.8999****************9998...9999***********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-11982IPR004330FAR1 DNA binding domain
PfamPF105512.5E-31142225IPR018289MULE transposase domain
PROSITE profilePS509669.78415451IPR007527Zinc finger, SWIM-type
SMARTSM005756.5E-5426453IPR006564Zinc finger, PMZ-type
PfamPF044348.3E-5427449IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MGMKKRFPVK KKISKKGDDG KHRWVMFACA RSGKSKSNSR NAFKKHPISK TNCGARVNVV  60
LCTDGRWRVT LVHHEHNHEL SPGKSRFYKN NRVIAPFVKR RLEMNDLAGI IPNKIFNSFV  120
VEAGGHENIP FLQKDCNNFL DKYDMPFAPF VGINHHGQSI LLGCALISSE DTKTFTWFYN  180
TWLECMGDRP PYAIVTDQAK AMQNAIENVF PNTRHRWCLW HIMKKMPEKL GGYKQYELIK  240
SAMEGVVYDS LSILEFEESW IMFTEKYNLH KNDWLDGLYI ERHRWVLVFV KDIFWAGMST  300
TQRSESMNAF FDGYVNSKTT LKQFVEQYEN ALRSKVEKEC QADFNSFNSR LPCITHYEIE  360
KQFQEIYTTA KFKEFQNELT GKIYCDVLSI KEDGGLVVYE ILEDKIGGKD RQKTFIVSFK  420
QSDCNVKCNC RLFEFRGILC RHSIVVFIQQ KVKIVPERYN SSSMEKRYKE VS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021806714.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2G5ETG70.0A0A2G5ETG7_AQUCA; Uncharacterized protein
STRINGAquca_004_00129.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-82FAR1-related sequence 5