PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G145000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 780aa    MW: 90041.1 Da    PI: 7.0403
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G145000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR162.99.4e-2068157291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g r+ + ++ ++++++ r  tr++C a +++  ++  + w v  + ++HnH lap
  Aqcoe2G145000.1.p  68 FYNEYAKIKGFSVRKDHKTVI--DGRTRRRRFICSCAGVRAGKWTNlHKRRKKARRLTRCNCPAAMNIVYDDeLNIWTVRGFMSQHNHVLAP 157
                        9**************986665..999***************99988677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1768157IPR004330FAR1 DNA binding domain
PfamPF105511.4E-35241335IPR018289MULE transposase domain
PROSITE profilePS5096610.67520556IPR007527Zinc finger, SWIM-type
SMARTSM005757.1E-6531558IPR006564Zinc finger, PMZ-type
PfamPF044341.1E-5532553IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 780 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LHRVGLRLQD EIHDDMGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKIKGFSV RKDHKTVIDG RTRRRRFICS CAGVRAGKWT NLHKRRKKAR  120
RLTRCNCPAA MNIVYDDELN IWTVRGFMSQ HNHVLAPPDP IENLAVIIDG DARDLYNQMN  180
RARVERILDG DANLVNSFLE DMNVYDPGFF KKIQVNEKKH LTKLFWSDSQ SQEDYKLFGD  240
VLMFDSTYRT NRYDMPLVVF AGVNNHRYTV IYALALMNNE TIDSYEWALK TFLAAMDGIA  300
PKSVITDGDA AIRNAIENVF PKSKHRLCVW HVVQNAITNV WIEGFVKGFV EAMFYKGPPD  360
AFEKKWAELL IEYNTVAEQK WVHNIYEKRE MWAEGYLREY FFARCRSNQR CESINFVVRL  420
CVKSGLTLIE LVDKLLQKIR HIRYRDFEGE VNTTMTRSAQ IPNLTLIGEQ AEALYTRAGY  480
EYLFNQLLYE PSYVVNESYE DREDIIKYLV NRHMHPNAPA TVEYSREKDA YNCTCKLFER  540
VGFLCRHILA VVKHTHVKAL PKSCILHRWT REAKSSSLDF GTNPTTSCRL GFGLRLKELE  600
EYSRDLFMWG CESVQRCTMV KAHIAAFDKG EPEEVVQGFD EAPVPENPLG LEEEPVASTP  660
QQSFPHDNIV DPQRDLGRRG GPKKAKRKMF HQRTSTSLVH NMNETGETTG VFADVPPKVP  720
SFRKAPTCSF CNEVGHRCNA CPRRRKHQST DSPIAGVVVT DMGDAYLHTQ PNGDVFWSF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1741745PRRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ870.0A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-82FAR1-related sequence 5