PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G145900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 403aa    MW: 46056.4 Da    PI: 8.8686
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G145900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR134.28.2e-1162141190
               FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                        +fY+eY+++ GFs+r+++  ++ ++g   +r+   +  g +         + r++++ r++Cka+++++k+k ++ +evt +e+ H+H l+
  Aqcoe2G145900.1.p  62 NFYREYGRKEGFSTRTRTIDRK-QHGVHNRREV--KFGGISG--------KPRNTSTVRCECKASMRLTKRKfEEIYEVTMVENTHSHGLV 141
                        6***************998887.4443333332..2233322........34567899**************9***************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-762141IPR004330FAR1 DNA binding domain
PfamPF105512.7E-32257350IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MDLSKDDDVN NLEPIDLSGD DGEPNRCANI GSPSNETPKK DTSKAETPHL GMTFKTVDDA  60
KNFYREYGRK EGFSTRTRTI DRKQHGVHNR REVKFGGISG KPRNTSTVRC ECKASMRLTK  120
RKFEEIYEVT MVENTHSHGL VSPCKRMNMR VNKCMPEAAK KLTMVLHDEG LPVAKVASVF  180
CGDTIGFTAK DCHNHFGSTR KKPKEGDATA VLHYFEKMSA EDPQFYYAIQ SDAKGRAVNL  240
FWVDGRSRMQ YEYFGDVVSF DTTYRTNAYK MPFAPFTGVN HHLMSIQFGC GLLLDETEGT  300
FVWLFKTWLA AMGGRPPTSM ITDQDKAMTS AVARVFLNTR HRHCLWHITN KFPEKLAHVM  360
HVNEKFSEEL KLFISGSYRT YDFERKWNEH MVKYKLGEPQ FV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007208966.21e-130protein FAR1-RELATED SEQUENCE 5
RefseqXP_008219733.21e-129PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A251P3841e-130A0A251P384_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ101651e-130(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-76FAR1-related sequence 5