PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G146600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 202aa    MW: 23568.3 Da    PI: 4.377
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G146600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54.2e-191059249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49
                       +ie    r+vtf+kRr+g++KKA+ L++LC+a++ +i+fs+  ++++y++
  Aqcoe2G146600.1.p 10 KIEKRESRNVTFCKRRQGLFKKASTLCTLCNANIGIIVFSPsaKNNVYTF 59
                       799999*********************************98335778888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.2E-24162IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.109161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-22280IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-14323IPR002100Transcription factor, MADS-box
PfamPF003199.8E-211059IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-142338IPR002100Transcription factor, MADS-box
PRINTSPR004046.9E-143859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MGKRRIAIEK IEKRESRNVT FCKRRQGLFK KASTLCTLCN ANIGIIVFSP SAKNNVYTFG  60
NPCVDTLIDR FYNNQNNNSL IVVDEESSEK ERGWLWWDNI DFSNFDSMEK LQRLQTDLMD  120
VKQKVFNQLE KLINGSSSSP PPSPEERVKE EEEEWLWPSV EDMDALLNNF DYCEQAATVS  180
KEENQQDEEL FFDINQYFNY S*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802240.0JX680224.1 Aquilegia coerulea MADS-box protein AGL63 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EBD41e-146A0A2G5EBD4_AQUCA; Uncharacterized protein
STRINGAquca_010_00738.11e-146(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.17e-25AGAMOUS-like 61