PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G157700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 652aa    MW: 73269.4 Da    PI: 5.3414
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G157700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.7e-11403446755
                        HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                         +Er+RR+++N+++  Lr l+Pk +      K++ a+iL  A+e++k+Lq
  Aqcoe2G157700.1.p 403 VAERKRRKKLNDRLYALRALVPKiS------KMDRASILGDAIEFVKELQ 446
                        68*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.5E-2157203IPR025610Transcription factor MYC/MYB N-terminal
CDDcd000834.89E-13394450No hitNo description
PROSITE profilePS5088815.428396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.45E-16399460IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.8E-15402451IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-9403446IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16403459IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550213.55E-5540606No hitNo description
CDDcd048737.92E-5544606No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0048657Biological Processanther wall tapetum cell differentiation
GO:0005634Cellular Componentnucleus
GO:0000978Molecular FunctionRNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MTIAPLCQKK RILIVSKLFT EDSFYFCFKA HIFIQRTSYK EELLFRGNMG GFHNLLEKLR  60
PLVGLKSWDY CVLWKLSEDQ RFIEWVGCCC GGVDHNIQNG GDELLFSVST VLSCKDVMFQ  120
HSRTKNCDLL AQLPSSMPLD SGIHGHALIS NQPRWINLSD FPNSSASDET VGTKVLIPVF  180
GGLVELFIAK QVSEDSQLIE FVMAQCNVQW DQEAMNTQMD GYAMNDNGII GNESKQFPSN  240
VFDLKTPSNL WASPASTTSD NLNLPWDVSL EQIRGCNSPM NFFNGLVQQF PSTSENRLRN  300
DIGGFEGSTE SIISDRPTTA FNSFVEHGFP EFVPLHQSLM ENSTSLHPSV DSCVTKQPST  360
EKDSIKQESG RADSGSDCSD QNEDDDQKTV GRGGKRHHSK NLVAERKRRK KLNDRLYALR  420
ALVPKISKMD RASILGDAIE FVKELQKRVK DLQDELEEPS DENGDKNKIT NGDKNGISPG  480
TKSEQDESLE GIKFGITDQG TRCSSNGKIT NCMKQTEDFM TAEEKPRMEP QVEVTQMDGK  540
EFYLKVFCEH RPGGFVRLTE AMSSLGLEVT NVNVNTFRSL VMNVFKVERR DNEMVQPDFV  600
RDSLLDITRS PIGGWSEPFL VSENGSNLDY NHPQQANTHR HRHLNSLNLQ P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-14394455263Transcription factor MYC2
5gnj_B9e-14394455263Transcription factor MYC2
5gnj_E9e-14394455263Transcription factor MYC2
5gnj_F9e-14394455263Transcription factor MYC2
5gnj_G9e-14394455263Transcription factor MYC2
5gnj_I9e-14394455263Transcription factor MYC2
5gnj_M9e-14394455263Transcription factor MYC2
5gnj_N9e-14394455263Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1404411ERKRRKKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023876341.10.0transcription factor ABORTED MICROSPORES
TrEMBLA0A2G5DJ540.0A0A2G5DJ54_AQUCA; Uncharacterized protein
STRINGAquca_019_00147.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.11e-142bHLH family protein