PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G166200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 723aa    MW: 83604 Da    PI: 8.5126
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G166200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.79.1e-1935121191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Y++YA  +GFsvrk++s++s +  ++i+k++f+Cs+eg+ ++  +     +++r e r gC a+++++++ d+k+++tk+  +HnHel+p
  Aqcoe2G166200.1.p  35 DYYKSYAFVLGFSVRKKRSNSSeSIPRRIVKSQFCCSCEGTYKQVLTP----EKKRDERRFGCLAEFEIRLK-DEKYVLTKFIADHNHELVP 121
                        59***************99999567889*************9998777....889999**************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-1635121IPR004330FAR1 DNA binding domain
PfamPF105515.2E-33243336IPR018289MULE transposase domain
PROSITE profilePS509669.656511559IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-7534561IPR006564Zinc finger, PMZ-type
PfamPF044342.0E-6535557IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MEHSGSNVED LSKEPTRDVV PQLGMSFDTV KEAYDYYKSY AFVLGFSVRK KRSNSSESIP  60
RRIVKSQFCC SCEGTYKQVL TPEKKRDERR FGCLAEFEIR LKDEKYVLTK FIADHNHELV  120
PTWDSNLLRS HRSIQECEGG LMMKMHSAGL KQDQIYSYHC AEVGGAQNSK FTQADCNNLI  180
QRKRKEAFQK GDAQSLLEYF KNEKKKNKFF FYSIRHNEDN EITAVFFCDP RSRRDYGMFG  240
DAMCFDTTFK TNNYNMICAP IIGVNSHGQT IFFGCGLLDG ETTDAFIWLF SAFLEAMRGK  300
HPKTIFTDQA MAISNAIEAI FPGSSHRLCL WHLYQNALSH LSGVFAKFDT FSTQFKKCIY  360
EPETISEFEE YWDVMLEKYG LRDNVWLQGL YKSREKWGQV YARAFFCAGM TTTQRSESIN  420
TFLKRFFGTT LVLREFVELY SQAMDHRRQK ERVAETNTKQ TAANLLSNRL LEKEASKKYT  480
RKVFKIFQDE YKKLLDLRLN VENNDGEIRI YRVSEMGNGR RDRTLTYVPS KQEVRCSCRK  540
FDFQGILCSH ALKLFRELEF TSLPSCYYLK RWSKEAVSEV IFDAYVEAIQ SDLDPMATAR  600
YSELSHISQL IVATSASCDS LFTYAKSKMQ QLLADLNAIA ISEKKNADKT SQMNTSNVCE  660
NSFQNLDEDP TLRNPKVKRT RDIVDKPARN ETVVDSPTVY RPCQASSFQS HDLYGPVKRL  720
KF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538470.0AC253847.1 Aquilegia coerulea clone COL01-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.20.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2P6SL240.0A0A2P6SL24_ROSCH; Putative transcription factor FAR family
TrEMBLM5Y1H30.0M5Y1H3_PRUPE; Uncharacterized protein (Fragment)
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5