PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G222400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 675aa    MW: 74965 Da    PI: 9.564
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G222400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.13.6e-07569618147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                        r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Aqcoe2G222400.1.p 569 RRPFSVLEVEALVQAVEKLGTGRWRDVKIYAFdnaKHRTYVDLKDKWKTL 618
                        567888999**********************99**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF542362.1E-8372466IPR029071Ubiquitin-related domain
Gene3DG3DSA:3.10.20.904.9E-4373447No hitNo description
PROSITE profilePS500538.916376446IPR000626Ubiquitin domain
PROSITE profilePS5129414.977564623IPR017930Myb domain
SMARTSM007175.0E-7568621IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-9569619IPR009057Homeodomain-like
CDDcd116604.53E-16570620No hitNo description
SuperFamilySSF466896.28E-15570650IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MVLHKRLEYG FNGYQVPSFP RASRSTRGRS LFKTKAEDNQ LCAFELLATV AGKLLQEGES  60
SQSLSHVEDE KVQPSIHGLV RQEQHGEPSD PEGCDKSPIF SDFSLHGNDR NKYLKTPPHP  120
KHEVAVAHSS INANSSFSEK FDHAEVVTGE SRKDFVDFLS KIEGSPGNGK SSGNVLDGIE  180
RKVEYDSEKI SSVINGTFPD ISNSEYPMKL DVKPPALVCL NRSVEVPHTS FLPFQTNVKL  240
VSKDDDENIS GCTHPSIGNL KAFRPPLRIG DRRIRRLLAS KYWKVAPKLN DRKLHKSDMW  300
HTFRNTKASY TRQRSQRNFA YRRKLFDRLV SKSAEGARNE AIASKKGIIE DAIGSASQAS  360
LVASQESSYC SRESRVKLSI KSFRVPELFI EIPETATVGS LKRTVREAVT AILAGGLHVG  420
VVLKGKKVRD DNKTLLQTGI SHDDKVDALG FLLEPNPSPP SASAPQPIFH EDSPLYVTCD  480
IPQHLSRYPK TPVGDPVPLV ASPDPTLINE GTSVDNILDE VPCPIDMTAG NTAQGSRALV  540
AIPTSVEPLT AIPLHRKSRQ SKLAQRRIRR PFSVLEVEAL VQAVEKLGTG RWRDVKIYAF  600
DNAKHRTYVD LKDKWKTLVH TAKISPQQRR GEPVPQELLD RVLAAHAHWS EQQAMQQIKQ  660
QNETSLVFTS LMAE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A2e-535536591107Telomere binding protein TBP1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262528.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262529.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262530.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262531.10.0PREDICTED: telomere repeat-binding protein 5
RefseqXP_010262533.10.0PREDICTED: telomere repeat-binding protein 5
TrEMBLA0A2G5EXH30.0A0A2G5EXH3_AQUCA; Uncharacterized protein
STRINGAquca_003_00096.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.14e-89TRF-like 2