PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G230300.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 714aa MW: 82587.6 Da PI: 8.0821

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G230300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.2	4.8e-27	63	153	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn YA +v Fsvrks++++s+ ++ it +tf+Cs +g r++++k+ e++ r+ a +rtgCka+++v+k++ +kw+vt +++ HnH l+ Aqcoe2G230300.1.p 63 NFYNCYAGQVRFSVRKSSTYRSRITKDITGHTFCCSLQGLRDSRSKNFEERMRNAADSRTGCKAMMTVRKKTgGEKWVVTIVVEAHNHILV 153 6********************************************9********************99************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-22	63	153	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.8E-6	282	314	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
MVENGCGHEG ESSEINYNST NLDDVQEKIV EIVNDDDKKD EENTNGYCPC IGMEFDSEDD 60 AYNFYNCYAG QVRFSVRKSS TYRSRITKDI TGHTFCCSLQ GLRDSRSKNF EERMRNAADS 120 RTGCKAMMTV RKKTGGEKWV VTIVVEAHNH ILVTLTKRYL LRSQRKMEPI QKKITDDMRS 180 VGIRTSLMVD FLASETGGIQ NVGFTRKDVN NYLSAKRQKE LLVGDAQALL GHLQQQQLDN 240 PSFSYSIQYD MPFVPIVGVN HDIVLFGGAL LYSETEESFE WVILTDQESA IGGAITRVLP 300 ESWHRFCVWH INRNALKHLA HEINKHKGFL EDLDYCLYQY EMVEEFENAW NKMLEKYRLK 360 DNKWLESLFR KREKWASVYA RDIFCAGMYT TQRSELKFMR QYEREVVARR EEENMADYNT 420 NHHRPLLMEI EKEGAKVYTK TMFYKFQEQL FKGLSYRHRK VEENETRLIY NVWKEGHEDV 480 ARTIVFEPSI RVQSVAVSCL NLEVFMVEDV QNLPEQYILK RWTKDAKSGS VVSSENKSNQ 540 VKLEESVTSR YCGICQEGVN IASKASPYIE VFNVAKEGLA RTLREVEIAL KNLTLQSNHV 600 LGERVESDQN GEVNATSVQL DIQKPLLDPP IKKHKGQNPA RKLPWFEKKG KKKKKVRMET 660 FGGRKRKQSG KPGTTVHNGT NSKLRLEDND KDFCELNDET RFGKSELNKF PNR*

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

MVENGCGHEG ESSEINYNST NLDDVQEKIV EIVNDDDKKD EENTNGYCPC IGMEFDSEDD  60
AYNFYNCYAG QVRFSVRKSS TYRSRITKDI TGHTFCCSLQ GLRDSRSKNF EERMRNAADS  120
RTGCKAMMTV RKKTGGEKWV VTIVVEAHNH ILVTLTKRYL LRSQRKMEPI QKKITDDMRS  180
VGIRTSLMVD FLASETGGIQ NVGFTRKDVN NYLSAKRQKE LLVGDAQALL GHLQQQQLDN  240
PSFSYSIQYD MPFVPIVGVN HDIVLFGGAL LYSETEESFE WVILTDQESA IGGAITRVLP  300
ESWHRFCVWH INRNALKHLA HEINKHKGFL EDLDYCLYQY EMVEEFENAW NKMLEKYRLK  360
DNKWLESLFR KREKWASVYA RDIFCAGMYT TQRSELKFMR QYEREVVARR EEENMADYNT  420
NHHRPLLMEI EKEGAKVYTK TMFYKFQEQL FKGLSYRHRK VEENETRLIY NVWKEGHEDV  480
ARTIVFEPSI RVQSVAVSCL NLEVFMVEDV QNLPEQYILK RWTKDAKSGS VVSSENKSNQ  540
VKLEESVTSR YCGICQEGVN IASKASPYIE VFNVAKEGLA RTLREVEIAL KNLTLQSNHV  600
LGERVESDQN GEVNATSVQL DIQKPLLDPP IKKHKGQNPA RKLPWFEKKG KKKKKVRMET  660
FGGRKRKQSG KPGTTVHNGT NSKLRLEDND KDFCELNDET RFGKSELNKF PNR*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	640	654	RKLPWFEKKGKKKKK
2	650	666	KKKKKVRMETFGGRKRK
3	652	666	KKKVRMETFGGRKRK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	5e-83	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe2G230300.1.p