PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G231100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 188aa MW: 21006.3 Da PI: 4.7153

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G231100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.5e-05	34	56	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ L H++ H Aqcoe2G231100.1.p 34 YRCSFCKKGFSNAQALGGHMNIH 56 9********************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	9.38E-7	32	60	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.5E-5	32	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	11.655	34	61	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.003	34	56	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	36	56	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 188 aa Download sequence Send to blast
MESDTPAASG LESLNQIICW TTEDHQGASY IRSYRCSFCK KGFSNAQALG GHMNIHRRDR 60 AKLNLPASVD MNELSLNIIE ASNDRPVDKE AELEFSEHII CTLNFPSDIP TEDGVVTNND 120 ERSHTRELQQ LPLFAETPKA GYDKNLHNQS SSLYEDGPMK SEVHVDLKLR LGPETQDTCT 180 TTTKEFF*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5EXH0	1e-139	A0A2G5EXH0_AQUCA; Uncharacterized protein
STRING	Aquca_003_00162.1	1e-139	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53820.1	4e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G231100.1.p