PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G244700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Whirly
Protein Properties Length: 169aa    MW: 18883.7 Da    PI: 10.1663
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G244700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly971.9e-3086167284
             Whirly   2 vyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakg 84 
                        v+k+kaal+v + +p+f++    + k +++G +ll++ +a++erkydW+k+q  als+tev++l++l + +sceffhdp++k+
  Aqcoe2G244700.1.p  86 VFKGKAALSVYPLLPKFNES-ETSSKYDKKGCILLKFWPAIGERKYDWQKRQMIALSPTEVGSLISLEPGKSCEFFHDPSMKS 167
                        9*****************99.567899*****************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.30.31.106.3E-3772167IPR009044ssDNA-binding transcriptional regulator
SuperFamilySSF544471.49E-2977167IPR009044ssDNA-binding transcriptional regulator
PfamPF085364.6E-3286167IPR013742Plant transcription factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
QLHTLHSPLS TLHSTPSPLL SSFPSPLRYP DTISKMMKLS YFVRSRSAVS EKVAGKVSNT  60
SNALWTHCFT TQAGTRSNQI FADYTVFKGK AALSVYPLLP KFNESETSSK YDKKGCILLK  120
FWPAIGERKY DWQKRQMIAL SPTEVGSLIS LEPGKSCEFF HDPSMKSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3n1h_A4e-3672167399StWhy2
3n1i_A4e-3672167399protein StWhy2
3n1j_A4e-3672167399Protein StWhy2
3n1k_A4e-3672167399protein StWhy2
3n1l_A4e-3672167399protein StWhy2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSingle-stranded DNA-binding protein that may be involved in the maintenance of mitochondrial genome stability by preventing break-induced DNA rearrangements. {ECO:0000269|PubMed:21911368}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010912668.29e-45single-stranded DNA-binding protein WHY2, mitochondrial
SwissprotD9J0344e-36WHY2_SOLTU; Single-stranded DNA-binding protein WHY2, mitochondrial
TrEMBLA0A2G5DUB02e-93A0A2G5DUB0_AQUCA; Uncharacterized protein
TrEMBLA0A2G5DUG03e-93A0A2G5DUG0_AQUCA; Uncharacterized protein
TrEMBLA0A2G5EY606e-94A0A2G5EY60_AQUCA; Uncharacterized protein
STRINGAquca_003_00282.11e-94(Aquilegia coerulea)
STRINGAquca_014_00047.14e-94(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71260.14e-36WHIRLY 2