PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G245400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 300aa MW: 34386.4 Da PI: 8.2388

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G245400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	156	180	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 + C C+k ++ +++++H+++ H Aqcoe2G245400.1.p 156 FYCDLCNKQYKLAMEFEVHLSSydH 180 78*****************987555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00443	6.9E-17	59	104	IPR000467	G-patch domain
PROSITE profile	PS50174	16.648	61	106	IPR000467	G-patch domain
Pfam	PF01585	8.4E-15	62	102	IPR000467	G-patch domain
SuperFamily	SSF57667	9.54E-5	143	183	No hit	No description
Pfam	PF12171	5.2E-5	156	183	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	158	180	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MANRWNNIRQ ETITQNKAQV KRREEYDDLG EDFRLPINHK PTENLDLDNV EQASLDTQLT 60 SSNIGFRLLQ KMGWKGKGLG KDEQGMVEPI KAGMRDPKLG IGKQEEDDFF TAEENIQRKR 120 LDVELEETEE HVKKREVIAE REQKIQSEVK EIRKVFYCDL CNKQYKLAME FEVHLSSYDH 180 NHRKRFKDMR DMHGSSSRDD RQKREQLRQE REMARFAQIA DAHKQQQQQQ QQQSGEALAV 240 SSLSSAAAPA GQDQRTTLKF GFSSKAGASK KSFGGAAAKK TKVPVRVSSV FGNDSDEEH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271048.1	1e-166	PREDICTED: G patch domain-containing protein 8-like
TrEMBL	A0A2G5EXZ7	0.0	A0A2G5EXZ7_AQUCA; Uncharacterized protein
STRING	Aquca_003_00283.1	0.0	(Aquilegia coerulea)

Link Out ? help Back to Top
Phytozome	Aqcoe2G245400.1.p