PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G250000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB_related
Protein Properties Length: 96aa    MW: 11129.5 Da    PI: 4.3247
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G250000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-071154445
                       S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
    Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                       WT eE +l+  a +    +   +W+ ++ ++g gR+++++  ++ 
  Aqcoe2G250000.1.p 11 WTWEENKLFELALAVVEEDnpnRWDVVSMMVG-GRSAEEVEKHYK 54
                       **********999999998999**********.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007177.1E-6759IPR001005SANT/Myb domain
SuperFamilySSF466893.51E-111065IPR009057Homeodomain-like
PfamPF002492.7E-61154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.4E-41157IPR009057Homeodomain-like
PROSITE profilePS500906.0631157IPR017877Myb-like domain
CDDcd001677.20E-61157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MDGFQGLFHG WTWEENKLFE LALAVVEEDN PNRWDVVSMM VGGRSAEEVE KHYKILLEDL  60
RSIESGYMDH RLGEAHLCLP VEYTRSISWT EEDQK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-17166166RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010270991.13e-38PREDICTED: protein RADIALIS-like 3
SwissprotQ6NNN08e-18RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A2G5EYL53e-64A0A2G5EYL5_AQUCA; Uncharacterized protein
STRINGAquca_003_00327.15e-65(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.11e-19RAD-like 1