PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G272900.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 735aa    MW: 84522.4 Da    PI: 9.4141
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G272900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR158.72e-1863156290
               FAR1   2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHe 88 
                        fY+eY+++ GFs r+++  ++ + ++ it+  +vCs+eg +++++ k    + + r++++ r++Cka+++v+k+k ++ +evt +e+ H+H 
  Aqcoe2G272900.1.p  63 FYREYGRQEGFSNRIRTIDRKqHGSNMITSCLLVCSREGVHNRKEVKfggISGKPRNTSTVRCECKASMRVTKRKfEEIYEVTMVENTHSHG 154
                        9*************999887725566788999*********999999999888999999****************9***************9 PP

               FAR1  89 la 90 
                        l+
  Aqcoe2G272900.1.p 155 LV 156
                        97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-1563156IPR004330FAR1 DNA binding domain
PfamPF105514.0E-33258351IPR018289MULE transposase domain
PROSITE profilePS509668.976542578IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-4553575IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 735 aa     Download sequence    Send to blast
MELSKDDGVN NLEPIDLSGD DGEPNKCCNI GSPSNVTPKK DISKVETPHR GMTFKTVDDA  60
KTFYREYGRQ EGFSNRIRTI DRKQHGSNMI TSCLLVCSRE GVHNRKEVKF GGISGKPRNT  120
STVRCECKAS MRVTKRKFEE IYEVTMVENT HSHGLVSPCK RMNMRANKCM PEAAKKLTMV  180
FHDEGLPVAK VVSVFCGDTI GKKPKEGHAT SILHYFEKMS AEDPQFYYAI QSDAKGRAVN  240
FFWVDGRSRM QYEYFGDVVS FDTTYRTNAY KMPFAPFTGV NHHLMSIQFG CGLLLDETEG  300
TFVWLFKTWL AAMGGRPPTS MITDQDKAMT SAVARVFPNT SHRHCLWHIT NKFPEKLAHV  360
MHVNENFSEE LKLIISGSYR TYDFERKWNE HMVKYKLVDH SWLKGIYEAR RTWVLAYHLD  420
TFFAGMNTTG RSESMNSYYD MFLKPTTTLS DFVYSIDKLL RLIIKNERDS DYRTEHSSRI  480
VGKDDFLLKH AGKVYTINAF GKFKSQWDKA KGVYKIDKEE GGDNGFNTYT LKSRNVNNPN  540
FWKVIFNTST LRGECECKYF SFMGLPCGHL LKVFWRHDID QIPDHFIMRR WTQKANTYRA  600
ILTHGCRLAT QLAFDASTHD EIYKYLVEKF DELSIEIAKR KKTLNKSANS EVASNQVLLL  660
NPNISQTKGM RKEKNKASDS GRIKRGIEIS QEKKGRRCSC CQKVVNHDLR TCPNNPNRKK  720
KTTCTNDDHY PEES*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021815267.10.0protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBLA0A251PRW60.0A0A251PRW6_PRUPE; Uncharacterized protein
STRINGXP_008219733.10.0(Prunus mume)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-113FAR1-related sequence 5