PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G277000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

CAMTA

Protein Properties

Length: 913aa MW: 103558 Da PI: 6.7817

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G277000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	163.7	3.2e-51	30	146	2	117
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenp 92 ++e k+rwl+++ei+aiL n++ ++++ ++ + p+sg ++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+np Aqcoe2G277000.1.p 30 MEEaKTRWLRPNEIHAILYNHNIFTIHVKPVHLPRSGLIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNP 121 55669************************************************************************************* PP CG-1 93 tfqrrcywlLeeelekivlvhylev 117 f rrcywlL++++e++vlvhy+e+ Aqcoe2G277000.1.p 122 GFVRRCYWLLDKTYEHVVLVHYRET 146 *********************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	75.863	26	152	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-71	29	147	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	1.8E-44	32	145	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.5E-6	362	454	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.94E-15	367	453	IPR014756	Immunoglobulin E-set
CDD	cd00204	2.58E-15	535	660	No hit	No description
Pfam	PF12796	2.9E-7	548	629	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.02E-17	550	667	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.3E-17	558	665	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.324	559	664	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.9E-5	601	630	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.075	601	633	IPR002110	Ankyrin repeat
SMART	SM00248	1000	640	670	IPR002110	Ankyrin repeat
SMART	SM00015	230	711	735	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.76	749	775	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	70	764	786	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.577	765	794	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.074	787	809	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.444	788	812	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.012	789	809	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.7	868	890	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.773	869	898	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.13	870	890	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 913 aa Download sequence Send to blast
MDNNSASVRV AGAEIHGFHT LEDLDVAKMM EEAKTRWLRP NEIHAILYNH NIFTIHVKPV 60 HLPRSGLIVL FDRKKLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN 120 PGFVRRCYWL LDKTYEHVVL VHYRETSELQ DSPVTPPNSS SASSYSDSSS RLVSEETDSG 180 ADRAYYMDPE TPFGGESTDR GERMIVQNHE VRLHEINTLE WEDLLVSNDP NNFNITSQDD 240 ISFLQQQNHS EMYDSHNNSL QPIAESGSLG VGLPEDGHLL NKGTNSGVQN QEFDMVTEHH 300 DDSAHVVQDG FGTQDSFGRW MNGIVTDSPG SLNNLPVGST ISSGHESNTS TVLDPYQFLT 360 QQQIFSITDI SPAWSFTAEE TKVIVVGYFH PAHSHFAETN LFCVFGDVCV PAEMIQVGVI 420 RCRALPHNPG IVNFYLSFDG HTPISQVMTF EYRASILENG LSPHEDNKWE EFQVQIRLSR 480 LLFSTTNSLN MLLSNISPND LKEAKKFATA TSSVDKDWAY LMKSIGKNEI SFPQAKNNLF 540 EIILKNKLQE WLLCRVVEGC QITMRDRQGQ GVLHLCAILG YTWAVRPYSH SGLSLDFRDA 600 SGWTALHWAA FYGREKMVAI LLSAGANPSL VSDPTSEFPG GCNAADLASK NGYEGLAAYL 660 AEKGLTEHFR LMSVCGNISG SLQSNSTDLV NPGNLSEEQL CQKDTLTAYR TAAEAASRIQ 720 SAFRENSFKL RKKAVEIATP ETEARDIIAA MKIQHAFRNY DTRKKIAAAG RIQYRFRTWK 780 IRKDFLNMRR QAIKIQAAFR ALQVRKHYHK ILWSVGVLEK GILRWRQKRK GFRGLQVEST 840 EVVDGEQKKE SDVEDDFFRI SRKQAEDRIE RSVVRVQALF RSFRAQQEYR RMKMAYDQVK 900 LEELLDTEVG FD*

Sequence ? help Back to Top

Protein Sequence Length: 913 aa Download sequence Send to blast

MDNNSASVRV AGAEIHGFHT LEDLDVAKMM EEAKTRWLRP NEIHAILYNH NIFTIHVKPV  60
HLPRSGLIVL FDRKKLRNFR KDGHNWKKKK DGKTVKEAHE HLKVGNEERI HVYYAHGEDN  120
PGFVRRCYWL LDKTYEHVVL VHYRETSELQ DSPVTPPNSS SASSYSDSSS RLVSEETDSG  180
ADRAYYMDPE TPFGGESTDR GERMIVQNHE VRLHEINTLE WEDLLVSNDP NNFNITSQDD  240
ISFLQQQNHS EMYDSHNNSL QPIAESGSLG VGLPEDGHLL NKGTNSGVQN QEFDMVTEHH  300
DDSAHVVQDG FGTQDSFGRW MNGIVTDSPG SLNNLPVGST ISSGHESNTS TVLDPYQFLT  360
QQQIFSITDI SPAWSFTAEE TKVIVVGYFH PAHSHFAETN LFCVFGDVCV PAEMIQVGVI  420
RCRALPHNPG IVNFYLSFDG HTPISQVMTF EYRASILENG LSPHEDNKWE EFQVQIRLSR  480
LLFSTTNSLN MLLSNISPND LKEAKKFATA TSSVDKDWAY LMKSIGKNEI SFPQAKNNLF  540
EIILKNKLQE WLLCRVVEGC QITMRDRQGQ GVLHLCAILG YTWAVRPYSH SGLSLDFRDA  600
SGWTALHWAA FYGREKMVAI LLSAGANPSL VSDPTSEFPG GCNAADLASK NGYEGLAAYL  660
AEKGLTEHFR LMSVCGNISG SLQSNSTDLV NPGNLSEEQL CQKDTLTAYR TAAEAASRIQ  720
SAFRENSFKL RKKAVEIATP ETEARDIIAA MKIQHAFRNY DTRKKIAAAG RIQYRFRTWK  780
IRKDFLNMRR QAIKIQAAFR ALQVRKHYHK ILWSVGVLEK GILRWRQKRK GFRGLQVEST  840
EVVDGEQKKE SDVEDDFFRI SRKQAEDRIE RSVVRVQALF RSFRAQQEYR RMKMAYDQVK  900
LEELLDTEVG FD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	72	89	RKKLRNFRKDGHNWKKKK
2	73	88	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259340.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2G5EZD7	0.0	A0A2G5EZD7_AQUCA; Uncharacterized protein
STRING	Aquca_003_00568.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Aqcoe2G277000.1.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]