PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G277000.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

CAMTA

Protein Properties

Length: 871aa MW: 98497.6 Da PI: 6.6474

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G277000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	131.7	2.6e-41	21	104	34	117
CG-1 34 pksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 + g ++L++rkk+r+frkDG++wkkkkdgktv+E+he+LKvg+ e +++yYah+e+np f rrcywlL++++e++vlvhy+e+ Aqcoe2G277000.2.p 21 LEGGLIVLFDRKKLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGEDNPGFVRRCYWLLDKTYEHVVLVHYRET 104 567999****************************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01076	4.2E-42	1	105	IPR005559	CG-1 DNA-binding domain
PROSITE profile	PS51437	58.588	1	110	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	4.9E-34	23	103	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.4E-6	320	412	IPR013783	Immunoglobulin-like fold
SuperFamily	SSF81296	2.76E-15	325	411	IPR014756	Immunoglobulin E-set
CDD	cd00204	1.33E-15	493	618	No hit	No description
Pfam	PF12796	2.7E-7	506	587	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.87E-17	508	625	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.4E-17	516	623	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	18.324	517	622	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	1.9E-5	559	588	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.075	559	591	IPR002110	Ankyrin repeat
SMART	SM00248	1000	598	628	IPR002110	Ankyrin repeat
SMART	SM00015	230	669	693	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.76	707	733	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	70	722	744	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	6.577	723	752	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.074	745	767	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.444	746	770	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.011	747	767	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	2.7	826	848	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.773	827	856	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.13	828	848	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 871 aa Download sequence Send to blast
MDNNSASVRV AGAEIHGFHT LEGGLIVLFD RKKLRNFRKD GHNWKKKKDG KTVKEAHEHL 60 KVGNEERIHV YYAHGEDNPG FVRRCYWLLD KTYEHVVLVH YRETSELQDS PVTPPNSSSA 120 SSYSDSSSRL VSEETDSGAD RAYYMDPETP FGGESTDRGE RMIVQNHEVR LHEINTLEWE 180 DLLVSNDPNN FNITSQDDIS FLQQQNHSEM YDSHNNSLQP IAESGSLGVG LPEDGHLLNK 240 GTNSGVQNQE FDMVTEHHDD SAHVVQDGFG TQDSFGRWMN GIVTDSPGSL NNLPVGSTIS 300 SGHESNTSTV LDPYQFLTQQ QIFSITDISP AWSFTAEETK VIVVGYFHPA HSHFAETNLF 360 CVFGDVCVPA EMIQVGVIRC RALPHNPGIV NFYLSFDGHT PISQVMTFEY RASILENGLS 420 PHEDNKWEEF QVQIRLSRLL FSTTNSLNML LSNISPNDLK EAKKFATATS SVDKDWAYLM 480 KSIGKNEISF PQAKNNLFEI ILKNKLQEWL LCRVVEGCQI TMRDRQGQGV LHLCAILGYT 540 WAVRPYSHSG LSLDFRDASG WTALHWAAFY GREKMVAILL SAGANPSLVS DPTSEFPGGC 600 NAADLASKNG YEGLAAYLAE KGLTEHFRLM SVCGNISGSL QSNSTDLVNP GNLSEEQLCQ 660 KDTLTAYRTA AEAASRIQSA FRENSFKLRK KAVEIATPET EARDIIAAMK IQHAFRNYDT 720 RKKIAAAGRI QYRFRTWKIR KDFLNMRRQA IKIQAAFRAL QVRKHYHKIL WSVGVLEKGI 780 LRWRQKRKGF RGLQVESTEV VDGEQKKESD VEDDFFRISR KQAEDRIERS VVRVQALFRS 840 FRAQQEYRRM KMAYDQVKLE ELLDTEVGFD *

Sequence ? help Back to Top

Protein Sequence Length: 871 aa Download sequence Send to blast

MDNNSASVRV AGAEIHGFHT LEGGLIVLFD RKKLRNFRKD GHNWKKKKDG KTVKEAHEHL  60
KVGNEERIHV YYAHGEDNPG FVRRCYWLLD KTYEHVVLVH YRETSELQDS PVTPPNSSSA  120
SSYSDSSSRL VSEETDSGAD RAYYMDPETP FGGESTDRGE RMIVQNHEVR LHEINTLEWE  180
DLLVSNDPNN FNITSQDDIS FLQQQNHSEM YDSHNNSLQP IAESGSLGVG LPEDGHLLNK  240
GTNSGVQNQE FDMVTEHHDD SAHVVQDGFG TQDSFGRWMN GIVTDSPGSL NNLPVGSTIS  300
SGHESNTSTV LDPYQFLTQQ QIFSITDISP AWSFTAEETK VIVVGYFHPA HSHFAETNLF  360
CVFGDVCVPA EMIQVGVIRC RALPHNPGIV NFYLSFDGHT PISQVMTFEY RASILENGLS  420
PHEDNKWEEF QVQIRLSRLL FSTTNSLNML LSNISPNDLK EAKKFATATS SVDKDWAYLM  480
KSIGKNEISF PQAKNNLFEI ILKNKLQEWL LCRVVEGCQI TMRDRQGQGV LHLCAILGYT  540
WAVRPYSHSG LSLDFRDASG WTALHWAAFY GREKMVAILL SAGANPSLVS DPTSEFPGGC  600
NAADLASKNG YEGLAAYLAE KGLTEHFRLM SVCGNISGSL QSNSTDLVNP GNLSEEQLCQ  660
KDTLTAYRTA AEAASRIQSA FRENSFKLRK KAVEIATPET EARDIIAAMK IQHAFRNYDT  720
RKKIAAAGRI QYRFRTWKIR KDFLNMRRQA IKIQAAFRAL QVRKHYHKIL WSVGVLEKGI  780
LRWRQKRKGF RGLQVESTEV VDGEQKKESD VEDDFFRISR KQAEDRIERS VVRVQALFRS  840
FRAQQEYRRM KMAYDQVKLE ELLDTEVGFD *

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	30	47	RKKLRNFRKDGHNWKKKK
2	31	46	KKLRNFRKDGHNWKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator (PubMed:14581622). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved in response to cold. Contributes together with CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:28351986). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:14581622, ECO:0000269\|PubMed:28351986, ECO:0000305\|PubMed:11925432}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00435	DAP	Transfer from AT4G16150	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, wounding, abscisic acid, H(2)O(2) and salicylic acid. {ECO:0000269\|PubMed:12218065}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	-	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010259340.1	0.0	PREDICTED: calmodulin-binding transcription activator 5 isoform X2
Swissprot	O23463	0.0	CMTA5_ARATH; Calmodulin-binding transcription activator 5
TrEMBL	A0A2G5EZD7	0.0	A0A2G5EZD7_AQUCA; Uncharacterized protein
STRING	Aquca_003_00568.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16150.1	0.0	calmodulin binding;transcription regulators

Link Out ? help Back to Top
Phytozome	Aqcoe2G277000.2.p

Publications ? help Back to Top
Ye J, et al. Arabidopsis formin3 directs the formation of actin cables and polarized growth in pollen tubes. Plant Cell, 2009. 21(12): p. 3868-84 [PMID:20023198] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986] Lan Y,Liu X,Fu Y,Huang S Arabidopsis class I formins control membrane-originated actin polymerization at pollen tube tips. PLoS Genet., 2018. 14(11): p. e1007789 [PMID:30418966]