PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G277700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 239aa    MW: 27448 Da    PI: 9.4046
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G277700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.2e-2068157291
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                        fYneYAk  GFsvrk++++    +g++ +r+f Cs+ g re++ ++ ++++++ r  tr++C a l++  ++  + w v  + ++HnH lap
  Aqcoe2G277700.1.p  68 FYNEYAKFKGFSVRKDHKTVV--DGRTRRRRFICSCAGVRERKWTNlHKRRKKARRLTRCNCPAALNIVYDDeLNMWTVRGFMSQHNHVLAP 157
                        9***************97776..999****************9999677788899*************9999899*************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-1868157IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MSAFVDEFVE DFSDDSEAEG DNPRRRNADF LYKVGLRLQD EIHDDMGEIS DEDMLRARFN  60
TDEDAYFFYN EYAKFKGFSV RKDHKTVVDG RTRRRRFICS CAGVRERKWT NLHKRRKKAR  120
RLTRCNCPAA LNIVYDDELN MWTVRGFMSQ HNHVLAPSGG SHFLRSHRKV SLSNAVLAQN  180
LYALGVSKKL VMDIIISKSG SHAAAGCTAR DLYNQMNRAR VERIIDGDAN LVNSFLRI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106121RKWTNLHKRRKKARRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2G5EJ871e-166A0A2G5EJ87_AQUCA; Uncharacterized protein
STRINGAquca_007_00263.11e-166(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-23FAR1-related sequence 5