PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G280300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 213aa    MW: 23078.5 Da    PI: 9.4568
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G280300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000115173123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       ++C++C++ F ++  L  H++ H
  Aqcoe2G280300.1.p 51 FECQYCHREFANSQALGGHQNAH 73
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-64878No hitNo description
Gene3DG3DSA:3.30.160.607.5E-44977IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7395178IPR007087Zinc finger, C2H2
PfamPF139122.1E-55175IPR007087Zinc finger, C2H2
PROSITE patternPS0002805373IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009736Biological Processcytokinin-activated signaling pathway
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0010026Biological Processtrichome differentiation
GO:0022626Cellular Componentcytosolic ribosome
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MLIRNDVSSR EPSGQRHTSS VRLFGFSVME QQDNILPAPN QSDGNKENRK FECQYCHREF  60
ANSQALGGHQ NAHKKERQRA KRAQFQASTN RRFTTTSPIL SAHAMRSGPF IYSNGPTSFS  120
GGYGGGASAA RFHCPSSYYA TSAQLTPPAV PMILPSNNSP QESTSWCYVQ RPGNYGMATN  180
VSPGSSSSST RIMEDVDVGI DLHLSLAPSS TP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268055.14e-50PREDICTED: zinc finger protein 6-like
TrEMBLA0A2G5EZM61e-153A0A2G5EZM6_AQUCA; Uncharacterized protein
STRINGAquca_003_00597.11e-153(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06650.12e-14C2H2 family protein