PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G282600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARR-B
Protein Properties Length: 696aa    MW: 75812.4 Da    PI: 6.2416
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G282600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.5e-29208261155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Aqcoe2G282600.1.p 208 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 261
                        79*******************.********************************8 PP
2Response_reg72.81.3e-24301381109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+p+ +++l+++l++  y ev +++ +  al +l+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i+++  +++e + + +
  Aqcoe2G282600.1.p  30 VLVVDDDPTCLKILEKMLRNCLY-EVITCSRAVVALSMLRERTysFDIVLSDVHMPDMDGFKLLEHIGLEM-DLPVIMMSVDDKKEVVMKGV 119
                        89*********************.99*************999999**********************6654.8******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +e++++
  Aqcoe2G282600.1.p 120 THGACDYLIKPVRIEAIRN 138
                        ***************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363924.4E-1671687IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.3E-4027166No hitNo description
SuperFamilySSF521724.13E-3427154IPR011006CheY-like superfamily
SMARTSM004482.6E-2728140IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011040.68829144IPR001789Signal transduction response regulator, receiver domain
PfamPF000725.9E-2230138IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.33E-2531143No hitNo description
PROSITE profilePS5129412.178205264IPR017930Myb domain
SuperFamilySSF466893.05E-20205265IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-30206266IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-24208261IPR006447Myb domain, plants
PfamPF002491.0E-7210260IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MLNMDSGGGG TSKKASGDGV SDQFPAGLRV LVVDDDPTCL KILEKMLRNC LYEVITCSRA  60
VVALSMLRER TYSFDIVLSD VHMPDMDGFK LLEHIGLEMD LPVIMMSVDD KKEVVMKGVT  120
HGACDYLIKP VRIEAIRNIW QHVVRKRRNE LKEFEQSGSY EDNDRNHKAS EDVDYASSVI  180
EGSWKGSKKR KEDEDDLEDR DDTSTMKKPR VVWSVELHQQ FVAAVNQLGI DKAVPKKILE  240
LMNVPGLTRE NVASHLQKYR LYLRRLSGVS HPNGLNTPFM CSQEANFGSM SSFDGLDLQA  300
LAASGQLPPN SFATLQAGGL ARSTVNTGIG MPHLDQRIPF STEASKLRFG AGQQMTSSNK  360
QVDLYHGLPT NIEPKQLSHL HQSAQSSGSM GLQASEGTTG FMNLQTSLGT HSMNQSGAVL  420
GSQSNSPLMM QMAQSRSRGQ LLSDISSSHP SGTPLSIGQQ VFSNDMASRV LGKNITILNG  480
KATTYTPSFQ ASSMLDFQKK HTMDVPGNGF PVGITTGVSG LQSTGVFQDR GSLEVKGPRS  540
LPTGYVIFDE HPQHKSQEWG LQNVDLTFEA SQRPKPLQGN ITFSPPVLAH QGLWSSQRGG  600
PNGNVSIVGN TLVSLSEGNQ LGTSESFVQR GNSLPMDSSF RVKAESMGDL NSDNIFAAKT  660
FDQDDLMSAI LKQQGGGQLE NDFNFDGYPI DDIPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A7e-23204267164ARR10-B
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010268091.10.0PREDICTED: two-component response regulator ARR2-like isoform X2
TrEMBLA0A2G5EZQ20.0A0A2G5EZQ2_AQUCA; Two-component response regulator
STRINGAquca_003_00615.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.11e-161response regulator 2