PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G304500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 545aa    MW: 59332.1 Da    PI: 8.3856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G304500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.6e-0585107123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C+k F r  nL+ H r H
  Aqcoe2G304500.1.p  85 FVCEICNKGFQRDQNLQLHRRGH 107
                        89*******************88 PP
2zf-C2H2120.00065161183123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC +C+k +  +s+ k H +t+
  Aqcoe2G304500.1.p 161 WKCDKCSKKYAVQSDWKAHSKTC 183
                        58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.88E-784107No hitNo description
Gene3DG3DSA:3.30.160.601.9E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM0035598126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.0E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.88E-7156181No hitNo description
SMARTSM00355150161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MSNITGDGGG SFSSGTGEEV QQQQSANNNH FHGSNSGPSA TTNSNGSTSL QQPPVKKKRN  60
LPGTPDPEAE VIALSPTTLM ARNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRSTTD  120
IRKRVYICPE PTCVHHNPAR ALGDLTGIKK HFSRKHGEKK WKCDKCSKKY AVQSDWKAHS  180
KTCGTREYKC DCGTIFSRRD SFITHRAFCD ALAEENNRAA NQGLVTSIGG NIQDQVSNIL  240
SIIPNSNMNN QSGPISDFDL KNSMKTLPHE LMPMPLRPLN MGQGMLSCSS GTLFGGPRSI  300
PSSSSCLQLS SNTSSNFTGH HDQQLIASAN MSATALLQKA AQMGATASNN ANTSPMMQKN  360
FGSNMVGSDQ FSGISRPLSY GGGQQNNNNP YHNIQSQTDQ LQLLGMDGGH NRQFLPRARQ  420
DMSPRCFDGA VGADHSSLND VGMFSGMYMN GNHDDGFLKN IEHDSIVTTS TLQGRPVNSS  480
LDIPASGQDM MTVDFLGMGG SRSANLHQQQ QELEFEAISQ PSKLQSSDPF SYGHAVMEKP  540
MWDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34157221367Zinc finger protein JACKDAW
5b3h_F2e-34157221367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010259675.10.0PREDICTED: protein indeterminate-domain 2-like isoform X1
TrEMBLA0A2G5F0M00.0A0A2G5F0M0_AQUCA; Uncharacterized protein
STRINGAquca_003_00800.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-100C2H2 family protein