PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G305100.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

NF-YB

Protein Properties

Length: 193aa MW: 21274.1 Da PI: 8.9692

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G305100.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	175.2	6.6e-55	37	132	2	97
NF-YB 2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 +eqdr+lPianv+rimk++lP nakisk+aket+qecvsefi+fvtseasdkc++ekrkt+ngdd++wa+ tlGf++y+eplk yl+kyrel Aqcoe2G305100.1.p 37 KEQDRLLPIANVGRIMKQILPPNAKISKEAKETMQECVSEFIGFVTSEASDKCHKEKRKTVNGDDICWAMKTLGFDEYAEPLKRYLHKYREL 128 79**************************************************************************************** PP NF-YB 94 egek 97 egek Aqcoe2G305100.1.p 129 EGEK 132 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	9.3E-55	32	149	IPR009072	Histone-fold
SuperFamily	SSF47113	7.19E-41	39	138	IPR009072	Histone-fold
Pfam	PF00808	2.3E-27	42	106	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
PRINTS	PR00615	2.9E-20	70	88	No hit	No description
PRINTS	PR00615	2.9E-20	89	107	No hit	No description
PRINTS	PR00615	2.9E-20	108	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 193 aa Download sequence Send to blast
MVDNIGGWSS TTGGHKVKVG GGGATSSTSA DEKGCFKEQD RLLPIANVGR IMKQILPPNA 60 KISKEAKETM QECVSEFIGF VTSEASDKCH KEKRKTVNGD DICWAMKTLG FDEYAEPLKR 120 YLHKYRELEG EKANQKATNA AGKNESSTVG DEKDISILKR ILICIKIQTR YLPTRNEQAT 180 HGTGNLHNWR NT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_B	9e-45	37	127	2	92	Transcription factor HapC (Eurofung)
4g92_B	9e-45	37	127	2	92	Transcription factor HapC (Eurofung)
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010269452.1	1e-73	PREDICTED: nuclear transcription factor Y subunit B-4
Swissprot	O82248	7e-58	NFYB5_ARATH; Nuclear transcription factor Y subunit B-5
TrEMBL	A0A2G5F0I5	1e-106	A0A2G5F0I5_AQUCA; Uncharacterized protein
STRING	Aquca_003_00805.1	1e-107	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47810.1	6e-60	nuclear factor Y, subunit B5

Link Out ? help Back to Top
Phytozome	Aqcoe2G305100.1.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]