PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G307600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C3H
Protein Properties Length: 479aa    MW: 51231.6 Da    PI: 7.8914
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G307600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.24.9e-125277126
                       --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                       +++++C +++rtGtC yG+rC+F+H+
  Aqcoe2G307600.1.p 52 PGEPNCVYYMRTGTCGYGARCRFNHP 77
                       5789*********************8 PP
2zf-CCCH37.44.3e-1298123227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        +++ C++f++tG Ck+G++Ck++H++
  Aqcoe2G307600.1.p  98 GQPACQYFMKTGNCKFGASCKYHHPK 123
                        6799********************96 PP
3zf-CCCH34.82.9e-11144169227
                        -S---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                        ++++C+++ +tG+Ck+G +CkF+H++
  Aqcoe2G307600.1.p 144 GEKECSYYVKTGQCKFGLTCKFHHPQ 169
                        7899********************97 PP
4zf-CCCH34.24.1e-11299324126
                        --S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                        +++++C++++++G Ck+G++C+++H+
  Aqcoe2G307600.1.p 299 PGQPECQYYLKMGDCKFGSTCRYHHP 324
                        5789*********************8 PP
5zf-CCCH27.94e-09348371427
                        ---SGGGGTS--TTTTT-SS-SSS CS
            zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                        + C ff++ G+Ck+G+ C+F H++
  Aqcoe2G307600.1.p 348 PTCTFFLQHGICKFGPMCRFDHPM 371
                        78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.8075179IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-65178IPR000571Zinc finger, CCCH-type
PfamPF006426.9E-95377IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-65680IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-55777IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.26396124IPR000571Zinc finger, CCCH-type
SMARTSM003568.7E-896123IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-1098123IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.59E-6100125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4102123IPR000571Zinc finger, CCCH-type
SMARTSM003563.5E-5142169IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.361142170IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6144170IPR000571Zinc finger, CCCH-type
PfamPF006428.5E-9144169IPR000571Zinc finger, CCCH-type
SMARTSM003564.3E-5298325IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.61298326IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8300324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5302328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.418344372IPR000571Zinc finger, CCCH-type
SMARTSM003563.7E-6344371IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5348375IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-6348371IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MDLYGRNPTM EGSQLDPPTV GWTSSSQTPE SGLVDSMWQL GLGGRDSYPE RPGEPNCVYY  60
MRTGTCGYGA RCRFNHPHDR TAAAGAMRQA EEYPEREGQP ACQYFMKTGN CKFGASCKYH  120
HPKYEGGIMS SVLLNYYGYP LRPGEKECSY YVKTGQCKFG LTCKFHHPQP ASSSVAAPAP  180
TYYPPVQSTS VASPQQYGVT TSWQAARPTM LPGSYVQGAY GPVLLSPGMV PVQAWSPYAA  240
PLSPVASPGT QPTAGAGQLY GVTQLSPSAT AYTGPYQPLP SSAVPSSSTQ RENMFPERPG  300
QPECQYYLKM GDCKFGSTCR YHHPAERISP TTNCMLSIMG LPLRPGAPTC TFFLQHGICK  360
FGPMCRFDHP MGTLNYSPSA SSLAEMPVAP YPVGSSLVAL APSSSTSELR PEVIAGSMHN  420
SFSTRMTSAE NTSSGLIGPV FARSGTVPHP SVQFPVQGLA PSGDSSSTDH VSEVRSSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010243539.10.0PREDICTED: zinc finger CCCH domain-containing protein 32
SwissprotQ84W911e-173C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A2G5F0Q60.0A0A2G5F0Q6_AQUCA; Uncharacterized protein
STRINGAquca_003_00828.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-166C3H family protein