PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G307600.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C3H

Protein Properties

Length: 458aa MW: 48957.2 Da PI: 8.1574

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G307600.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	37.3	4.7e-12	52	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C +++rtGtC yG+rC+F+H+ Aqcoe2G307600.2.p 52 PGEPNCVYYMRTGTCGYGARCRFNHP 77 5789*********************8 PP
2	zf-CCCH	29.4	1.4e-09	83	102	8	27
GGGGTS--TTTTT-SS-SSS CS zf-CCCH 8 ffartGtCkyGdrCkFaHgp 27 +f++tG Ck+G++Ck++H++ Aqcoe2G307600.2.p 83 YFMKTGNCKFGASCKYHHPK 102 8*****************96 PP
3	zf-CCCH	34.8	2.7e-11	123	148	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+Ck+G +CkF+H++ Aqcoe2G307600.2.p 123 GEKECSYYVKTGQCKFGLTCKFHHPQ 148 7899********************97 PP
4	zf-CCCH	34.3	3.9e-11	278	303	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +++++C++++++G Ck+G++C+++H+ Aqcoe2G307600.2.p 278 PGQPECQYYLKMGDCKFGSTCRYHHP 303 5789*********************8 PP
5	zf-CCCH	28	3.8e-09	327	350	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C ff++ G+Ck+G+ C+F H++ Aqcoe2G307600.2.p 327 PTCTFFLQHGICKFGPMCRFDHPM 350 78********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.807	51	79	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	1.8E-6	51	78	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	6.5E-9	53	77	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	6.41E-6	56	80	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.0E-5	57	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.089	80	102	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-7	83	102	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	10.052	83	103	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.361	121	149	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-5	121	148	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.1E-9	123	148	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.85E-6	123	149	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-5	277	304	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.61	277	305	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.0E-8	279	303	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.44E-5	281	307	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.7E-6	323	350	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.418	323	351	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.0E-6	327	350	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-5	327	354	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 458 aa Download sequence Send to blast
MDLYGRNPTM EGSQLDPPTV GWTSSSQTPE SGLVDSMWQL GLGGRDSYPE RPGEPNCVYY 60 MRTGTCGYGA RCRFNHPHDR TAYFMKTGNC KFGASCKYHH PKYEGGIMSS VLLNYYGYPL 120 RPGEKECSYY VKTGQCKFGL TCKFHHPQPA SSSVAAPAPT YYPPVQSTSV ASPQQYGVTT 180 SWQAARPTML PGSYVQGAYG PVLLSPGMVP VQAWSPYAAP LSPVASPGTQ PTAGAGQLYG 240 VTQLSPSATA YTGPYQPLPS SAVPSSSTQR ENMFPERPGQ PECQYYLKMG DCKFGSTCRY 300 HHPAERISPT TNCMLSIMGL PLRPGAPTCT FFLQHGICKF GPMCRFDHPM GTLNYSPSAS 360 SLAEMPVAPY PVGSSLVALA PSSSTSELRP EVIAGSMHNS FSTRMTSAEN TSSGLIGPVF 420 ARSGTVPHPS VQFPVQGLAP SGDSSSTDHV SEVRSSS*

Sequence ? help Back to Top

Protein Sequence Length: 458 aa Download sequence Send to blast

MDLYGRNPTM EGSQLDPPTV GWTSSSQTPE SGLVDSMWQL GLGGRDSYPE RPGEPNCVYY  60
MRTGTCGYGA RCRFNHPHDR TAYFMKTGNC KFGASCKYHH PKYEGGIMSS VLLNYYGYPL  120
RPGEKECSYY VKTGQCKFGL TCKFHHPQPA SSSVAAPAPT YYPPVQSTSV ASPQQYGVTT  180
SWQAARPTML PGSYVQGAYG PVLLSPGMVP VQAWSPYAAP LSPVASPGTQ PTAGAGQLYG  240
VTQLSPSATA YTGPYQPLPS SAVPSSSTQR ENMFPERPGQ PECQYYLKMG DCKFGSTCRY  300
HHPAERISPT TNCMLSIMGL PLRPGAPTCT FFLQHGICKF GPMCRFDHPM GTLNYSPSAS  360
SLAEMPVAPY PVGSSLVALA PSSSTSELRP EVIAGSMHNS FSTRMTSAEN TSSGLIGPVF  420
ARSGTVPHPS VQFPVQGLAP SGDSSSTDHV SEVRSSS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010243539.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 32
Swissprot	Q84W91	1e-160	C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBL	A0A2G5F0Q6	0.0	A0A2G5F0Q6_AQUCA; Uncharacterized protein
STRING	Aquca_003_00828.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-154	C3H family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G307600.2.p