PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G310000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MIKC_MADS
Protein Properties Length: 247aa    MW: 28745.6 Da    PI: 8.1912
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G310000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.44e-28959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       krie+++ rqvtfskRr g++KKA+ LS+LCdaevavi+fs++gklye++s
  Aqcoe2G310000.1.p  9 KRIESDTSRQVTFSKRRSGLMKKASQLSILCDAEVAVIVFSNSGKLYEFAS 59
                       79***********************************************86 PP
2K-box32.53.7e-12991821393
              K-box  13 kaeslqqelakLkkeienLq...reqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                        + e l+ e +   ++i  L+   +++  l  edL  +s  eLq +e qLeksl+ +R+kKne ++e i+e ++ke+ l +e++a
  Aqcoe2G310000.1.p  99 NVEVLKDEEEETVNKIALLEtcnNKKLLLREEDLAFCSTDELQDMEIQLEKSLSIVRAKKNERYKETIKEIKQKERVLLSEEQA 182
                        55555556666666666666542333445569********************************************98877665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.193161IPR002100Transcription factor, MADS-box
SMARTSM004325.0E-39160IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.45E-33384IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-27323IPR002100Transcription factor, MADS-box
CDDcd002651.75E-38375No hitNo description
PfamPF003191.9E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004041.3E-273859IPR002100Transcription factor, MADS-box
PfamPF014863.7E-1099182IPR002487Transcription factor, K-box
PROSITE profilePS512979.985100194IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MVRRKTEIKR IESDTSRQVT FSKRRSGLMK KASQLSILCD AEVAVIVFSN SGKLYEFASS  60
SDMSKTIDRY QRYTKCKQTN NNYYNNAAPI QQQHHHGRNV EVLKDEEEET VNKIALLETC  120
NNKKLLLREE DLAFCSTDEL QDMEIQLEKS LSIVRAKKNE RYKETIKEIK QKERVLLSEE  180
QAMVYDKMST GLMQPWSQLQ SLDHQDCRQN MEVKDEISTT FSYQVNQKPD VETELFIGLG  240
RPNRSR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19182181MEF2 CHIMERA
6byy_B1e-19182181MEF2 CHIMERA
6byy_C1e-19182181MEF2 CHIMERA
6byy_D1e-19182181MEF2 CHIMERA
6bz1_A9e-20182181MEF2 CHIMERA
6bz1_B9e-20182181MEF2 CHIMERA
6bz1_C9e-20182181MEF2 CHIMERA
6bz1_D9e-20182181MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802550.0JX680255.1 Aquilegia coerulea MADS-box protein SOC1.3 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLK7X7F30.0K7X7F3_AQUCA; MADS-box protein SOC1.3
STRINGAquca_003_00853.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51870.34e-52AGAMOUS-like 71