PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G315700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 712aa    MW: 79355.7 Da    PI: 6.2433
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G315700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.4e-24145246199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt sd++++g +++ kk+a+++       ++++ + ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+a++L +gD ++F   
  Aqcoe2G315700.1.p 145 FSKALTASDTSTHGGFSVLKKHADDClppldlsQQPP-T-QELIAKDLHGIEWRFRHIYRGQPKRHLLTSGWSTFVSAKKLVTGDAFIFL-- 232
                        889****************************844443.3.49************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  Aqcoe2G315700.1.p 233 RGENGELRVGVRRA 246
                        449999*****996 PP
2Auxin_resp117.61.1e-38271353183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st+s+F+v+Y+Pr+s+seF+v++++++k+++++++vG+Rf+m+fete+s+errl+Gtvvg +d+dp+rWp+S+Wr+Lk
  Aqcoe2G315700.1.p 271 ASHAISTGSMFSVYYRPRTSPSEFIVPYSQYVKSTQTSYTVGTRFRMKFETEESPERRLAGTVVGNEDFDPLRWPGSEWRCLK 353
                        789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.23E-38135273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.4E-38139259IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.294145247IPR003340B3 DNA binding domain
SMARTSM010191.3E-22145247IPR003340B3 DNA binding domain
CDDcd100172.94E-21145245No hitNo description
PfamPF023621.3E-21145246IPR003340B3 DNA binding domain
PfamPF065076.4E-35271353IPR010525Auxin response factor
SuperFamilySSF542776.08E-6615694No hitNo description
PfamPF023099.6E-7615701IPR033389AUX/IAA domain
PROSITE profilePS5174517.443617699IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 712 aa     Download sequence    Send to blast
MGSNGVTEGM KVEGLSSKMK GTSSCFDESL INQGEKDSLY AELWQLCAGP LVTVPRLGEK  60
VYYFPQGHLE QVEAYTSQEA NVKMPKYDLP SKILCTVVHI ELMAEFDTDE VFAQVTLLPE  120
TQHKEPTMEK ERPQLQPQKS RIYTFSKALT ASDTSTHGGF SVLKKHADDC LPPLDLSQQP  180
PTQELIAKDL HGIEWRFRHI YRGQPKRHLL TSGWSTFVSA KKLVTGDAFI FLRGENGELR  240
VGVRRAMKPN NNASPSVLSN HSMQLGVLAS ASHAISTGSM FSVYYRPRTS PSEFIVPYSQ  300
YVKSTQTSYT VGTRFRMKFE TEESPERRLA GTVVGNEDFD PLRWPGSEWR CLKVQWDETF  360
ANVVRPDRVS PWKIEPVPVP SHLPQPKKAR IRLLSSPSET SVLLTDGFQQ GANNPSPQLQ  420
RQSGVFQGQE NNVISGHEFG IKGKPPLTHL LVPTPNLSWG HENELNYQMH DLFSPGLGNL  480
TPNSSVIPDV LGCRTYCLPP LSTIGVDGAD EIHEMWSSSN AISYMAPEPK EVVNTPTAQS  540
KSSGTCIIFG VDFIKNPLES VPSCDTSTDV VAPVTSQLAV VASDRLLDLN QSMKPSSYSS  600
FGCISEELDK TNVFNSRSCT KVHKYGTALG RSVDLMRFNG YDELINELDQ MFDFGGQLMD  660
YSKSWSVVYT DGEGNTKLIG DYPWQKFQSM VQKMYIYPKE EVDNLTAHIN W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1543737717355Auxin response factor 1
4ldw_A1e-1543737717355Auxin response factor 1
4ldw_B1e-1543737717355Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240998.10.0PREDICTED: auxin response factor 23-like
RefseqXP_010241005.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A2G5F1160.0A0A2G5F116_AQUCA; Auxin response factor
STRINGAquca_003_00899.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-179auxin response factor 2