PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G315700.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family ARF
Protein Properties Length: 629aa    MW: 70282.5 Da    PI: 6.5594
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G315700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.17.8e-2462163199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt sd++++g +++ kk+a+++       ++++ + ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+a++L +gD ++F   
  Aqcoe2G315700.2.p  62 FSKALTASDTSTHGGFSVLKKHADDClppldlsQQPP-T-QELIAKDLHGIEWRFRHIYRGQPKRHLLTSGWSTFVSAKKLVTGDAFIFL-- 149
                        889****************************844443.3.49************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++el+v+v+r+
  Aqcoe2G315700.2.p 150 RGENGELRVGVRRA 163
                        449999*****996 PP
2Auxin_resp117.88.9e-39188270183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha+st+s+F+v+Y+Pr+s+seF+v++++++k+++++++vG+Rf+m+fete+s+errl+Gtvvg +d+dp+rWp+S+Wr+Lk
  Aqcoe2G315700.2.p 188 ASHAISTGSMFSVYYRPRTSPSEFIVPYSQYVKSTQTSYTVGTRFRMKFETEESPERRLAGTVVGNEDFDPLRWPGSEWRCLK 270
                        789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.19E-3852190IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-3856176IPR015300DNA-binding pseudobarrel domain
PfamPF023621.1E-2162163IPR003340B3 DNA binding domain
SMARTSM010191.3E-2262164IPR003340B3 DNA binding domain
CDDcd100172.18E-2162162No hitNo description
PROSITE profilePS5086312.29462164IPR003340B3 DNA binding domain
PfamPF065075.4E-35188270IPR010525Auxin response factor
PfamPF023097.6E-7531618IPR033389AUX/IAA domain
SuperFamilySSF542775.1E-6532611No hitNo description
PROSITE profilePS5174517.443534616IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MPKYDLPSKI LCTVVHIELM AEFDTDEVFA QVTLLPETQH KEPTMEKERP QLQPQKSRIY  60
TFSKALTASD TSTHGGFSVL KKHADDCLPP LDLSQQPPTQ ELIAKDLHGI EWRFRHIYRG  120
QPKRHLLTSG WSTFVSAKKL VTGDAFIFLR GENGELRVGV RRAMKPNNNA SPSVLSNHSM  180
QLGVLASASH AISTGSMFSV YYRPRTSPSE FIVPYSQYVK STQTSYTVGT RFRMKFETEE  240
SPERRLAGTV VGNEDFDPLR WPGSEWRCLK VQWDETFANV VRPDRVSPWK IEPVPVPSHL  300
PQPKKARIRL LSSPSETSVL LTDGFQQGAN NPSPQLQRQS GVFQGQENNV ISGHEFGIKG  360
KPPLTHLLVP TPNLSWGHEN ELNYQMHDLF SPGLGNLTPN SSVIPDVLGC RTYCLPPLST  420
IGVDGADEIH EMWSSSNAIS YMAPEPKEVV NTPTAQSKSS GTCIIFGVDF IKNPLESVPS  480
CDTSTDVVAP VTSQLAVVAS DRLLDLNQSM KPSSYSSFGC ISEELDKTNV FNSRSCTKVH  540
KYGTALGRSV DLMRFNGYDE LINELDQMFD FGGQLMDYSK SWSVVYTDGE GNTKLIGDYP  600
WQKFQSMVQK MYIYPKEEVD NLTAHINW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-131129464355Auxin response factor 1
4ldw_A1e-131129464355Auxin response factor 1
4ldw_B1e-131129464355Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010240998.10.0PREDICTED: auxin response factor 23-like
RefseqXP_010241005.10.0PREDICTED: auxin response factor 23-like
TrEMBLA0A2G5F1160.0A0A2G5F116_AQUCA; Auxin response factor
STRINGAquca_003_00899.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.31e-153auxin response factor 2