PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G336000.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family M-type_MADS
Protein Properties Length: 203aa    MW: 23420.7 Da    PI: 9.1345
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G336000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF75.73.5e-241966249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +i+ +  rqvtfskRr+g++KKA+EL++LC+aeva+++fs+ gk++ +
  Aqcoe2G336000.1.p 19 KIQRSAHRQVTFSKRRTGLFKKASELCILCGAEVAIVVFSPAGKVFSF 66
                       688899***************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.8E-341069IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.9271070IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-291082IPR002100Transcription factor, MADS-box
CDDcd002651.11E-361183No hitNo description
PRINTSPR004045.3E-211232IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251966IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-213247IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-214768IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009559Biological Processembryo sac central cell differentiation
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MSPAPKRRNM GRKKIPIEKI QRSAHRQVTF SKRRTGLFKK ASELCILCGA EVAIVVFSPA  60
GKVFSFGHPS VESVVDRFLN QHDHMNHNVG LINARIREQQ QEEYTEVLNQ LQAEKKRGET  120
YEQYKKTEGD NHQYCLDAPM DDLGLHELEE MKRTLEELRS KLHDEMRKSN PFLAYNHLNN  180
QGFGMVAPFV GQSAMFWWNS NM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A7e-161078169MEF2C
5f28_B7e-161078169MEF2C
5f28_C7e-161078169MEF2C
5f28_D7e-161078169MEF2C
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6802360.0JX680236.1 Aquilegia coerulea MADS-box protein AGL75 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010277267.14e-55PREDICTED: agamous-like MADS-box protein AGL61
TrEMBLA0A2G5CHT21e-144A0A2G5CHT2_AQUCA; Uncharacterized protein
STRINGAquca_054_00126.11e-145(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.18e-43AGAMOUS-like 61