PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G340600.4.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 461aa MW: 53586 Da PI: 6.6222

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G340600.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	79.4	6.6e-25	71	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY++YA+++GF+vrk++++++ +n++i +r f+Cskeg+r+++++ + + r+ tr+gCka+l++k++ dg + v ++ +eHnHel Aqcoe2G340600.4.p 71 EFYSRYARHIGFKVRKNSTHQK-TNKTISRRLFCCSKEGFRRTHTRG--PSLKARPPTRIGCKARLQIKLQ-DGIYSVVEFIKEHNHELE 156 6************9987765.8888************9988..999***************.**************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-20	71	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.0E-30	280	373	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 461 aa Download sequence Send to blast
MDGQSRGFSF ELNESCDQLS SQSEDQASED DLHTRGNIRN EVDYEISGNY IVDVPKPKVG 60 MKFQTDSEAY EFYSRYARHI GFKVRKNSTH QKTNKTISRR LFCCSKEGFR RTHTRGPSLK 120 ARPPTRIGCK ARLQIKLQDG IYSVVEFIKE HNHELESGSK DQDLRLQGKN QSSEAEVLEN 180 RNHERTGSTI SHSQITMSAE VGAFPNLNST QFGCTSHMQH RINEVLQKGD AQFLFHYMQR 240 MQKENPYFVY SIRMSEDNQL GCCFWCDAKS RIDYSFFGDV VCFDTTYKTN DYEKPYAPFV 300 GLNNHGQFIL FACALLLEET VESFIWLFQT FLEAMNGKQP KTIFTEQSMP ITKAVQQVFF 360 NTHHRLCLRH IYQDSMKHLH QVSEQFTSFA EDVKMCIYDG KTEEEFQSSW SHLLDKYTLG 420 ENEWLHDLYQ MRQKWVPAYD QEHFSAGVCV PIRESIEHST *

Sequence ? help Back to Top

Protein Sequence Length: 461 aa Download sequence Send to blast

MDGQSRGFSF ELNESCDQLS SQSEDQASED DLHTRGNIRN EVDYEISGNY IVDVPKPKVG  60
MKFQTDSEAY EFYSRYARHI GFKVRKNSTH QKTNKTISRR LFCCSKEGFR RTHTRGPSLK  120
ARPPTRIGCK ARLQIKLQDG IYSVVEFIKE HNHELESGSK DQDLRLQGKN QSSEAEVLEN  180
RNHERTGSTI SHSQITMSAE VGAFPNLNST QFGCTSHMQH RINEVLQKGD AQFLFHYMQR  240
MQKENPYFVY SIRMSEDNQL GCCFWCDAKS RIDYSFFGDV VCFDTTYKTN DYEKPYAPFV  300
GLNNHGQFIL FACALLLEET VESFIWLFQT FLEAMNGKQP KTIFTEQSMP ITKAVQQVFF  360
NTHHRLCLRH IYQDSMKHLH QVSEQFTSFA EDVKMCIYDG KTEEEFQSSW SHLLDKYTLG  420
ENEWLHDLYQ MRQKWVPAYD QEHFSAGVCV PIRESIEHST *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026389309.1	1e-160	protein FAR1-RELATED SEQUENCE 5-like

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-83	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Aqcoe2G340600.4.p