PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G351400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family Trihelix
Protein Properties Length: 598aa    MW: 68405.6 Da    PI: 6.1543
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G351400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-1398151260
           trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkr 60 
                        W k+evlaL+++r+++++++++       W +vs+k++e g++rs+++Ckek+e+++k+
  Aqcoe2G351400.1.p  98 WLKEEVLALLTIRSSLGNEFSDF-----IWGHVSRKLAELGYKRSAEKCKEKFEEVSKY 151
                        *********************98.....9****************************98 PP
2trihelix95.84e-30447532186
           trihelix   1 rWtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+++ev  Li++r ++++++ + ++ k+plWe++s+ m e g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql+
  Aqcoe2G351400.1.p 447 RWPRDEVNSLINLRCNLQSSVDDkESTKAPLWERISQGMLELGYKRSAKKCKEKWENINKYFRKTKDTNKKR-SLDSKTCPYFHQLN 532
                        8*********************735799*******************************************8.999*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.2194151IPR001005SANT/Myb domain
PfamPF138378.9E-996152No hitNo description
PROSITE profilePS500906.51697149IPR017877Myb-like domain
SMARTSM007171.9444507IPR001005SANT/Myb domain
CDDcd122031.23E-23446512No hitNo description
PfamPF138371.7E-19446533No hitNo description
PROSITE profilePS500906.841447505IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MFNGVPEQFH QFIASRSTLP LPLPLTLPLH VSPPPPTFSV HELQQQPSHQ VFQSHLLQPL  60
HRQTSTHESE EKEEAERVVG VNLEIEGMRS ASELMDPWLK EEVLALLTIR SSLGNEFSDF  120
IWGHVSRKLA ELGYKRSAEK CKEKFEEVSK YCNNNSYGNY YRSFNELEAL FEDQNPKSID  180
DDKLVRNTND DQEKMEVNME ENSANETLEN PIEENQTEEN QYVVKKPKKK KKKYHQIELL  240
KGFSEFVNKI MVQQEELHKK LLEDMERREE ERVAREEAWK KKEMDRFFKE MEIRAQEQAI  300
ACDRESKIVE FLNQFTSNIS QTQGLVVQKD NQVFKTPMGK STNFPTTSPS INVLPENPSS  360
SRISAKPNAP SSSAMILSPQ NKISSPTQNN PQMPNSSNLD PSSHHNPNPV NTQTNTNIPP  420
SSSTQLLPLN PKPINSASTD REDYGKRWPR DEVNSLINLR CNLQSSVDDK ESTKAPLWER  480
ISQGMLELGY KRSAKKCKEK WENINKYFRK TKDTNKKRSL DSKTCPYFHQ LNTLYNQGRL  540
TMPSEVPENR SVATPPPETG VGSGASHQDA GLSSEAIVHV NEEGEKNMVQ VPLEFEY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224232KKPKKKKKK
2225232KPKKKKKK
3490498KRSAKKCKE
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0097685e-37AP009768.1 Lotus japonicus genomic DNA, clone: LjT40E15, TM1928, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_026456984.10.0trihelix transcription factor GTL2-like
TrEMBLA0A2G5CK610.0A0A2G5CK61_AQUCA; Uncharacterized protein
STRINGAquca_049_00159.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.19e-54Trihelix family protein