PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G353000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 482aa MW: 53587.9 Da PI: 9.3014

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G353000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.4	2.6e-05	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aqcoe2G353000.1.p 78 FVCEICKKGFQRDQNLQLHRRGH 100 89*******************88 PP
2	zf-C2H2	13.3	0.00026	154	176	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +++ Aqcoe2G353000.1.p 154 WKCEKCSKKYAVQSDWKAHTKSC 176 58******************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	9.5E-5	77	100	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.01E-7	77	100	No hit	No description
PROSITE profile	PS50157	10.637	78	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.039	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2
SMART	SM00355	82	119	149	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.6E-4	142	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	9.01E-7	149	174	No hit	No description
SMART	SM00355	130	154	174	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence Send to blast
MLSSFMSNST SLSEEASVSS VTRVQDFSSL NLMFSPISPK QQQQQLKVKK RRSTPGNPDP 60 DAEVIALSPK SLMATNRFVC EICKKGFQRD QNLQLHRRGH NLPWKLRQRS STEIRKRVYV 120 CPEPTCVHNH PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKSCGTKE 180 YRCDCGTLFS RKDSFITHRA FCDALAEETA KLSNNSSTSI SPPQKNPTEH QPLYFHPQSL 240 TFPFSYPPTT QIPISSWDPT SSNQILIKPE LHYHNSVLTS QLLNPDLNFH HHQQDQNINS 300 FLQEPPPPQK NFLTPTFFQQ HPHSSTGTST TSNTHTVVSN LSATALLQKA VNAGVAAMSS 360 ATQSQSVGHM TSTVTTQSQM GGASGEFGSV SHMGSNRISP GCLSPHSANF STWQKGDSLT 420 RDFLGLTGGR CSSSGDRNAR NMFSFNRAVD DFPSYYPDRS LLRPHDFGFA DDPASETWSD 480 C*

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence Send to blast

MLSSFMSNST SLSEEASVSS VTRVQDFSSL NLMFSPISPK QQQQQLKVKK RRSTPGNPDP  60
DAEVIALSPK SLMATNRFVC EICKKGFQRD QNLQLHRRGH NLPWKLRQRS STEIRKRVYV  120
CPEPTCVHNH PSRALGDLTG IKKHFSRKHG EKKWKCEKCS KKYAVQSDWK AHTKSCGTKE  180
YRCDCGTLFS RKDSFITHRA FCDALAEETA KLSNNSSTSI SPPQKNPTEH QPLYFHPQSL  240
TFPFSYPPTT QIPISSWDPT SSNQILIKPE LHYHNSVLTS QLLNPDLNFH HHQQDQNINS  300
FLQEPPPPQK NFLTPTFFQQ HPHSSTGTST TSNTHTVVSN LSATALLQKA VNAGVAAMSS  360
ATQSQSVGHM TSTVTTQSQM GGASGEFGSV SHMGSNRISP GCLSPHSANF STWQKGDSLT  420
RDFLGLTGGR CSSSGDRNAR NMFSFNRAVD DFPSYYPDRS LLRPHDFGFA DDPASETWSD  480
C*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	150	213	3	66	Zinc finger protein JACKDAW
5b3h_F	3e-35	150	213	3	66	Zinc finger protein JACKDAW
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	45	51	LKVKKRR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010279249.1	1e-168	PREDICTED: protein indeterminate-domain 12-like
Swissprot	O22759	1e-109	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A2G5CK45	0.0	A0A2G5CK45_AQUCA; Uncharacterized protein
STRING	Aquca_049_00144.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	3e-96	indeterminate(ID)-domain 12

Link Out ? help Back to Top
Phytozome	Aqcoe2G353000.1.p

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]