PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G361300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family FAR1
Protein Properties Length: 653aa    MW: 75285.5 Da    PI: 8.1315
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G361300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR160.93.9e-1935121191
               FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                        ++Yn+YA  +GFsvrk++s++s +  ++i+k++f+Cs+eg+ ++  +     +++r e r gC a+++++++ d+k+++tk+  +HnHel+p
  Aqcoe2G361300.1.p  35 DYYNSYAFVLGFSVRKKRSNSSeSIPRRIVKSQFCCSCEGTYKQVLTP----EKKRDERRFGCLAEFEIRLK-DEKYVLTKFIADHNHELVP 121
                        69***************99999567889*************9998777....889999**************.*****************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-1635121IPR004330FAR1 DNA binding domain
PfamPF105511.3E-33220313IPR018289MULE transposase domain
PROSITE profilePS509669.742488536IPR007527Zinc finger, SWIM-type
SMARTSM005753.0E-7511538IPR006564Zinc finger, PMZ-type
PfamPF044341.6E-6512534IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MEHSGSNVED LSKEPTRDVV PQLGMSFDTV KEAYDYYNSY AFVLGFSVRK KRSNSSESIP  60
RRIVKSQFCC SCEGTYKQVL TPEKKRDERR FGCLAEFEIR LKDEKYVLTK FIADHNHELV  120
PTWDSNLLRS HRSIQECEGG LMMKMHSAGL KQGQIYSYHC AEVGGPQNSK FTQADCNNLI  180
QRKRKEAFQK GDAQSLLEYF KNEKKKNKSR RDYGMFGDAM CFDTTFKTNN YNMICAPIIG  240
VNSHGQTIFF GCGLLDGETT DAFIWLFNAF LEAMGGKHPK TIFTDQAMAI SNAIEAIFPG  300
SSHRLCLWHL YQNALTHLSG VFAKFDTFST QLKKCIYEPE TISEFEEYWD VMLEKYGLRD  360
NVWLQGLYKS REKWGQVYAR AFFCAGMTTT QRSESINAFL KRFFGTTLVL REFVELYSQA  420
MDHRRQKERV AETNTKQTAA NLLSNWLVEK EASKKYTRKV FKIFQDEYKK LLDLRLNVEN  480
DDGEIRIYRV SEMGNGRRDH TLTYVPSKQE VRCSCRKFEF QGILCSHALK LFRELEFTSL  540
PSCYYLKRWS KEAVSEVIFD AYGEAIQSDL DPMATARYSE LSHISQLIVA TSASCDSLFT  600
YAKSKMQQLL ADLNAMAISE KKNADKTSQM NTSNVCENSF QNLDEDPTLR NPK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2538470.0AC253847.1 Aquilegia coerulea clone COL01-D05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007224311.20.0protein FAR1-RELATED SEQUENCE 5
RefseqXP_016649709.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2P6SL240.0A0A2P6SL24_ROSCH; Putative transcription factor FAR family
STRINGEMJ255100.0(Prunus persica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-124FAR1-related sequence 5