PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G363700.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family WRKY
Protein Properties Length: 360aa    MW: 40127.5 Da    PI: 10.2282
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G363700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY992.9e-31293350359
                        -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                        D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ ++p+++++tYegeHnh+
  Aqcoe2G363700.1.p 293 DEYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLDEPSMLIVTYEGEHNHS 350
                        9************************9988****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105339.8E-18244289IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.801.5E-33279351IPR003657WRKY domain
PROSITE profilePS5081129.425286352IPR003657WRKY domain
SuperFamilySSF1182907.85E-27289350IPR003657WRKY domain
SMARTSM007741.9E-38291351IPR003657WRKY domain
PfamPF031062.8E-27293349IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MEEVEEANKA AVESCLKVVT ILSKPLDQTQ YRNLMVETGK AVFRFKRVVS LLDNNGSGHG  60
RVRKQLKNFK FQSSLPETLF LDKQVTVKDI SAQTLQLLKI NDLSKPALEL NSTATNTLQL  120
TQQNNFLENS PPDMGSVSKT SHLSSQPQPT ATPYQLYYQQ QLQQQRLQFQ QHQQHLKFQA  180
EMLQLRSNGG ISSKLDSSSC TQTMSSTKSF MSSLSIDGSV ANMSGNSFHL VGAPESSNSQ  240
QTHKRRCSAR GADGSVKCGS SGRCHCSKRR KLRVKRSIKV PAISNKIADI PPDEYSWRKY  300
GQKPIKGSPH PRGYYKCSSM RGCPARKHVE RCLDEPSMLI VTYEGEHNHS RVMSQSANT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-192873491071WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002270614.21e-145PREDICTED: probable WRKY transcription factor 74
RefseqXP_021894273.11e-145probable WRKY transcription factor 74
SwissprotQ93WU61e-103WRK74_ARATH; Probable WRKY transcription factor 74
TrEMBLA0A2G5CJP40.0A0A2G5CJP4_AQUCA; Uncharacterized protein
STRINGAquca_049_00050.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-78WRKY DNA-binding protein 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]