PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G365600.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 205aa    MW: 24062.5 Da    PI: 6.26
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G365600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.66e-10851611180
                        HHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EE CS
                 B3  11 lksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfv 80 
                        l +grl +  kfa+++        ++ +e ++++t++d  g++ +++++ + ++ ++vlt+GW+eF  + +L++   +
  Aqcoe2G365600.1.p  85 LDQGRLLIRSKFAKQInfllregeNITSEDGVKVTVYDCMGKEHTMYYKKWANK-SHVLTTGWNEFHLESDLRTEHEI 161
                        45699*********99*****9987778899*****************888886.689************99987655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-1374176IPR015300DNA-binding pseudobarrel domain
CDDcd100172.05E-1174180No hitNo description
PfamPF037545.1E-674148IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.101.6E-1574170IPR015300DNA-binding pseudobarrel domain
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MVRVVEEDQQ QEENSSNSEL DEEVLDAGSN LMYLEEKPID AKTAELFSFF RDVFMIEHIP  60
LGLWGRNGIC TSDFVKPLEV SDLKLDQGRL LIRSKFAKQI NFLLREGENI TSEDGVKVTV  120
YDCMGKEHTM YYKKWANKSH VLTTGWNEFH LESDLRTEHE ITLWGFRHLG TPEQRLCFYV  180
TWEIMSPARI RELQEKKKKK RKRK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195203KKKKKRKRK
2196201KKKKRK
3197203KKKRKRK
4198203KKRKRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.17e-11B3 family protein