PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G368300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family C2H2
Protein Properties Length: 214aa    MW: 23813.8 Da    PI: 7.804
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G368300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000115577123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       y+C+ C++ F++   L  H+++H
  Aqcoe2G368300.1.p 55 YSCTFCKREFRSAQALGGHMNVH 77
                       99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.7E-65281No hitNo description
Gene3DG3DSA:3.30.160.608.4E-45380IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.9E-65578IPR007087Zinc finger, C2H2
SMARTSM003550.00655577IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1775582IPR007087Zinc finger, C2H2
PROSITE patternPS0002805777IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0009755Biological Processhormone-mediated signaling pathway
GO:0010093Biological Processspecification of floral organ identity
GO:0010160Biological Processformation of organ boundary
GO:0042127Biological Processregulation of cell proliferation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MEKSSWNKMK DGCGVDGKSF ITSNKKDVGE PWDYRNQQFH GEDLYSGFSW PPRSYSCTFC  60
KREFRSAQAL GGHMNVHRRD RARLRQYSPP WEGQTTSLNP NPSPSYSPIS SSSVYTTFPS  120
MLSPSLSCLP SSQSPAFSSE MKTPSVSTSP VVLESTCSNG EDLTKTMKTL KGFIQEDECR  180
ILKKGKMVLL DLEIGLHGSV NEDLDLELRL GYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A3e-135077229superman protein
2l1o_A3e-135077229Transcriptional regulator SUPERMAN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010262486.12e-55PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLA0A2G5CZ351e-150A0A2G5CZ35_AQUCA; Uncharacterized protein
STRINGAquca_034_00409.11e-151(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23130.11e-24C2H2 family protein