PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G368400.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

C2H2

Protein Properties

Length: 181aa MW: 20407.2 Da PI: 4.9625

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G368400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.7	0.00019	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Aqcoe2G368400.1.p 33 YECVFCKRGFTTAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.23E-6	31	59	No hit	No description
PROSITE profile	PS50157	10.99	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 181 aa Download sequence Send to blast
MESSQPEDAK SSSEDSDNKK EQLNEDAGTG RFYECVFCKR GFTTAQALGG HMNIHRRDRA 60 RNKQPTQPSV SNQPMEDFSR SGVLSPFPGH SSFFSPARES QMKSQMYFQS SESSGGQKYG 120 YINEEMHSNK PWSLKLFEEN PHTNLSLQIT PTDRADKPEE KQPTEETDDV DLELRLGHDP 180 *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2G5CYZ1	1e-132	A0A2G5CYZ1_AQUCA; Uncharacterized protein
STRING	Aquca_034_00408.1	1e-133	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-14	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G368400.1.p