PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G373400.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family MYB
Protein Properties Length: 275aa    MW: 30947.7 Da    PI: 6.1116
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G373400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.61.2e-171461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       rg+WT+eEd llv ++++ G g+W++ ++  g+ R++k+c++rw +yl
  Aqcoe2G373400.1.p 14 RGPWTPEEDHLLVSYIQENGHGNWRALPKLAGLLRCGKSCRLRWTNYL 61
                       89******************************99************97 PP
2Myb_DNA-binding54.42.8e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++T eE+e + +++++lG++ W++Ia++++ gRt++++k+ w+++l
  Aqcoe2G373400.1.p  67 RGNFTDEEEETIMQLHEKLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112
                        89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.799961IPR017930Myb domain
SuperFamilySSF466898.8E-3110108IPR009057Homeodomain-like
SMARTSM007171.2E-121363IPR001005SANT/Myb domain
PfamPF002492.1E-161461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.2E-241568IPR009057Homeodomain-like
CDDcd001674.41E-91661No hitNo description
PROSITE profilePS5129426.40162116IPR017930Myb domain
SMARTSM007179.7E-1566114IPR001005SANT/Myb domain
PfamPF002495.4E-1667112IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-2769117IPR009057Homeodomain-like
CDDcd001672.69E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MGRAPCCEKM GLKRGPWTPE EDHLLVSYIQ ENGHGNWRAL PKLAGLLRCG KSCRLRWTNY  60
LRPDIKRGNF TDEEEETIMQ LHEKLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLKHSQ  120
VTPDTKSHLI KSEANMGKES KSKSKANSRK FSAPKINDEI PAPMSPQPSS SELSSGIVST  180
TTTGESTTIT GENDKNSSKD EYTESWETLP QTDESLWSGV MPMEHFSLME ELSTMSTDPA  240
LQFPVSSSLS TQSSIIDDEF WYDLFAKAEE LPEF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-27121162105MYB PROTO-ONCOGENE PROTEIN
1h8a_C4e-271211625128MYB TRANSFORMING PROTEIN
1mse_C3e-27121162105C-Myb DNA-Binding Domain
1msf_C3e-27121162105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in cold-regulation of CBF genes and in the development of freezing tolerance. May be part of a complex network of transcription factors controlling the expression of CBF genes and other genes in response to cold stress. Binds to the MYB recognition sequences in the promoters of CBF1, CBF2 and CBF3 genes (PubMed:17015446). Involved in drought and salt tolerance. May enhance expression levels of genes involved in abscisic acid (ABA) biosynthesis and signaling, as well as those encoding stress-protective proteins (PubMed:19161942). {ECO:0000269|PubMed:17015446, ECO:0000269|PubMed:19161942}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and drought stress (PubMed:19161942). Induced by salt stress (PubMed:19161942). {ECO:0000269|PubMed:19161942}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023879142.11e-100transcription factor MYB14-like
SwissprotQ9LTC42e-77MYB15_ARATH; Transcription factor MYB15
TrEMBLA0A2G5CZQ90.0A0A2G5CZQ9_AQUCA; Uncharacterized protein
STRINGAquca_034_00364.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.19e-75myb domain protein 14
Publications ? help Back to Top
  1. Schnaubelt D, et al.
    Low glutathione regulates gene expression and the redox potentials of the nucleus and cytosol in Arabidopsis thaliana.
    Plant Cell Environ., 2015. 38(2): p. 266-79
    [PMID:24329757]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Ma X, et al.
    CYCLIN-DEPENDENT KINASE G2 regulates salinity stress response and salt mediated flowering in Arabidopsis thaliana.
    Plant Mol. Biol., 2015. 88(3): p. 287-99
    [PMID:25948280]
  4. Kim SH, et al.
    Phosphorylation of the transcriptional repressor MYB15 by mitogen-activated protein kinase 6 is required for freezing tolerance in Arabidopsis.
    Nucleic Acids Res., 2017. 45(11): p. 6613-6627
    [PMID:28510716]
  5. Chezem WR,Memon A,Li FS,Weng JK,Clay NK
    SG2-Type R2R3-MYB Transcription Factor MYB15 Controls Defense-Induced Lignification and Basal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(8): p. 1907-1926
    [PMID:28733420]
  6. Pal S, et al.
    TransDetect Identifies a New Regulatory Module Controlling Phosphate Accumulation.
    Plant Physiol., 2017. 175(2): p. 916-926
    [PMID:28827455]