PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G375000.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

MYB

Protein Properties

Length: 1140aa MW: 127900 Da PI: 4.8141

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G375000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	8	53	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Aqcoe2G375000.1.p 8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53 78***************************.**********986 PP
2	Myb_DNA-binding	32.6	1.9e-10	60	103	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Aqcoe2G375000.1.p 60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	2	57	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.6E-18	5	56	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	6	55	IPR001005	SANT/Myb domain
CDD	cd00167	5.33E-12	10	53	No hit	No description
Pfam	PF13921	5.7E-13	10	70	No hit	No description
SuperFamily	SSF46689	8.99E-21	33	107	IPR009057	Homeodomain-like
CDD	cd11659	1.10E-30	55	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.8E-14	57	104	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.443	58	107	IPR017930	Myb domain
SMART	SM00717	1.7E-12	58	105	IPR001005	SANT/Myb domain
Pfam	PF11831	8.2E-56	426	672	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1140 aa Download sequence Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT 60 EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPNDDPR 120 KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR 180 LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKKPP AGFFDVADEE THVEQPKFPT 240 TIEELEGKRR VDVEAQLRKQ DIARNKIAQR QDAPSSILQV NKLNDPESVR KRSKLMLPAP 300 QITDHELEEI AKMGYASDIV SGSEHIGEGS GATRALLANY AQTPQQGMTP FRTPQRTPGG 360 KADAIMMEAE NLARLRESQT PLLGGDNPEL HPSDFSGVTP KKREIQTPHP MSTPSTPGAM 420 GLTPRSGMTP SAGLTPRIGM TPSRDGYSFG MTPKGTPIRD ELRINISEDM DVHDGAKHEL 480 RSQAELRRDL RSGLTSLPQP KNEYQIVVQP LPEENDEPED KVEEDMSDKI AREKAEEEAK 540 QQELLKKRSK VLQRELPRPP PASVELIKNS LMKSDEDKSS FVPPTSFEQA DEMIRKELLS 600 LLEHDNAKYP LEEKVGKEKK KGGKRAPSGK STTFVPEIEE FANDILKEAD SLINEEIEYL 660 RVAMGHGNES LDEFVKAHDA CQEDLMYFPT RYAYGLSSVA GNMEKLTALQ HEFENVKNRM 720 DDETKKVQRL EQKIKLLTHG YQTRGGKLWS QIEATFKQMN TAATELECFQ ALQKQEHYAA 780 SHRINVLFEE INRQKELEEN LQKRYGDLVA EKERIQRLLE EHKRQAQIQE EIDSQNCALE 840 ESKLQAQIQE EIAEKNRAFE LSISAADQVD NVQEQVTDAI PKDPGTDMDV DSHLDSTSLE 900 ANLTKDDMVV GKAMLVQDSC CKGPNSSDQP LTADNDDTSG VIVQILNVPV QEVALNGGPA 960 PTLLGTEEMH MTSDSVMDQM PPGIGDSLKI SQEEINVMSE NSHMESKILV EEQLVVMEAG 1020 TQDGIVMEAE ASLRHSSMDS LKVSQEELNA TSENSNMESK ILVEEQLVVT GAGMQDGIVT 1080 KSEASLEDSL DAGRENITIS SSEKRIVVNL DGEADENLKC GVDAVSNNET MPVLNEDLS*

Sequence ? help Back to Top

Protein Sequence Length: 1140 aa Download sequence Send to blast

MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD ENYEPNDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TRGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDTRQR KRKRKGIDYN AEIPFEKKPP AGFFDVADEE THVEQPKFPT  240
TIEELEGKRR VDVEAQLRKQ DIARNKIAQR QDAPSSILQV NKLNDPESVR KRSKLMLPAP  300
QITDHELEEI AKMGYASDIV SGSEHIGEGS GATRALLANY AQTPQQGMTP FRTPQRTPGG  360
KADAIMMEAE NLARLRESQT PLLGGDNPEL HPSDFSGVTP KKREIQTPHP MSTPSTPGAM  420
GLTPRSGMTP SAGLTPRIGM TPSRDGYSFG MTPKGTPIRD ELRINISEDM DVHDGAKHEL  480
RSQAELRRDL RSGLTSLPQP KNEYQIVVQP LPEENDEPED KVEEDMSDKI AREKAEEEAK  540
QQELLKKRSK VLQRELPRPP PASVELIKNS LMKSDEDKSS FVPPTSFEQA DEMIRKELLS  600
LLEHDNAKYP LEEKVGKEKK KGGKRAPSGK STTFVPEIEE FANDILKEAD SLINEEIEYL  660
RVAMGHGNES LDEFVKAHDA CQEDLMYFPT RYAYGLSSVA GNMEKLTALQ HEFENVKNRM  720
DDETKKVQRL EQKIKLLTHG YQTRGGKLWS QIEATFKQMN TAATELECFQ ALQKQEHYAA  780
SHRINVLFEE INRQKELEEN LQKRYGDLVA EKERIQRLLE EHKRQAQIQE EIDSQNCALE  840
ESKLQAQIQE EIAEKNRAFE LSISAADQVD NVQEQVTDAI PKDPGTDMDV DSHLDSTSLE  900
ANLTKDDMVV GKAMLVQDSC CKGPNSSDQP LTADNDDTSG VIVQILNVPV QEVALNGGPA  960
PTLLGTEEMH MTSDSVMDQM PPGIGDSLKI SQEEINVMSE NSHMESKILV EEQLVVMEAG  1020
TQDGIVMEAE ASLRHSSMDS LKVSQEELNA TSENSNMESK ILVEEQLVVT GAGMQDGIVT  1080
KSEASLEDSL DAGRENITIS SSEKRIVVNL DGEADENLKC GVDAVSNNET MPVLNEDLS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	2	816	3	799	Cell division cycle 5-like protein
5xjc_L	0.0	2	816	3	799	Cell division cycle 5-like protein
5yzg_L	0.0	2	816	3	799	Cell division cycle 5-like protein
5z56_L	0.0	2	816	3	799	Cell division cycle 5-like protein
5z57_L	0.0	2	816	3	799	Cell division cycle 5-like protein
5z58_L	0.0	2	816	3	799	Cell division cycle 5-like protein
6ff4_L	0.0	2	816	3	799	Cell division cycle 5-like protein
6ff7_L	0.0	2	816	3	799	Cell division cycle 5-like protein
6icz_L	0.0	2	816	3	799	Cell division cycle 5-like protein
6id0_L	0.0	2	816	3	799	Cell division cycle 5-like protein
6id1_L	0.0	2	816	3	799	Cell division cycle 5-like protein
6qdv_O	0.0	2	816	3	799	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	185	204	KRRELKAAGIDTRQRKRKRK
2	199	204	RKRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246794.1	0.0	PREDICTED: cell division cycle 5-like protein
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A2G5CYR2	0.0	A0A2G5CYR2_AQUCA; Uncharacterized protein
STRING	Aquca_034_00352.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Link Out ? help Back to Top
Phytozome	Aqcoe2G375000.1.p

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]