PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G375500.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family NAC
Protein Properties Length: 287aa    MW: 32550.6 Da    PI: 5.0635
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G375500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.92.1e-49101401129
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                        lppGfrF P+deelv++yL kk++++kl+ +   + ev+++ +ePw+Lp  +k +++ewyfFs rd+kyatg r+nr+t+sg+Wkatgkd++
  Aqcoe2G375500.1.p  10 LPPGFRFFPSDEELVCHYLFKKIANEKLSSDVGtMVEVNLHICEPWQLPDVAKLGDNEWYFFSFRDRKYATGFRSNRTTTSGFWKATGKDRP 101
                        79*************************7774435***************888889************************************* PP

                NAM  92 vlsk.kgelvglkktLvfykgrapkgektdWvmheyrle 129
                        ++++ ++  vg++ktLvfy grap+g kt Wvmhe+rle
  Aqcoe2G375500.1.p 102 IYDStTHGIVGMRKTLVFYFGRAPNGIKTGWVMHEFRLE 140
                        **9866677***************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.35E-597158IPR003441NAC domain
PROSITE profilePS5100556.52410158IPR003441NAC domain
PfamPF023653.7E-2611139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MSLRDIEATL PPGFRFFPSD EELVCHYLFK KIANEKLSSD VGTMVEVNLH ICEPWQLPDV  60
AKLGDNEWYF FSFRDRKYAT GFRSNRTTTS GFWKATGKDR PIYDSTTHGI VGMRKTLVFY  120
FGRAPNGIKT GWVMHEFRLE NMQMPPKEEW VLCRVFHKGK GELTTRDGLG DEFNDRRGIS  180
SPNLSSSPPV DNMTTGSNQI INSSSIPQCS YHQNNSSTMI NLAALNPPFL ELSQKQYGSS  240
SNEEISSKNG DEFLFDMILG NDVLGIGEAS NFDEMRFEDE DHMMFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-46715814165NO APICAL MERISTEM PROTEIN
1ut4_B3e-46715814165NO APICAL MERISTEM PROTEIN
1ut7_A3e-46715814165NO APICAL MERISTEM PROTEIN
1ut7_B3e-46715814165NO APICAL MERISTEM PROTEIN
3ulx_A3e-4641587168Stress-induced transcription factor NAC1
4dul_A3e-46715814165NAC domain-containing protein 19
4dul_B3e-46715814165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that mediates auxin signaling to promote lateral root development. Activates the expression of two downstream auxin-responsive genes, DBP and AIR3. {ECO:0000269|PubMed:11114891}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by auxin.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246799.11e-118PREDICTED: protein CUP-SHAPED COTYLEDON 3-like
SwissprotQ84TE61e-62NAC22_ARATH; NAC domain-containing protein 21/22
TrEMBLA0A2G5CYQ70.0A0A2G5CYQ7_AQUCA; Uncharacterized protein
STRINGAquca_034_00347.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28530.15e-79NAC domain containing protein 74
Publications ? help Back to Top
  1. Le Hénanff G, et al.
    Grapevine NAC1 transcription factor as a convergent node in developmental processes, abiotic stresses, and necrotrophic/biotrophic pathogen tolerance.
    J. Exp. Bot., 2013. 64(16): p. 4877-93
    [PMID:24043850]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  4. Huo X,Wang C,Teng Y,Liu X
    Identification of miRNAs associated with dark-induced senescence in Arabidopsis.
    BMC Plant Biol., 2015. 15: p. 266
    [PMID:26530097]
  5. Chen X, et al.
    Auxin-Independent NAC Pathway Acts in Response to Explant-Specific Wounding and Promotes Root Tip Emergence during de Novo Root Organogenesis in Arabidopsis.
    Plant Physiol., 2016. 170(4): p. 2136-45
    [PMID:26850273]
  6. Liu C,Wang B,Li Z,Peng Z,Zhang J
    TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth.
    Plant Physiol., 2018. 176(1): p. 742-756
    [PMID:29122985]