PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G390200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family B3
Protein Properties Length: 180aa    MW: 20422.3 Da    PI: 8.613
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G390200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B337.44.5e-12921553898
                        EEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE- CS
                 B3  38 ledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfr 98 
                        + + + + W + + y  + +++ry+ + GW++Fv +n+Lk gD ++F+l+  + ++ e++v++++
  Aqcoe2G390200.1.p  92 VLNCRKKNWHMLY-YgdKEGRSRYFDSVGWRKFVTDNELKIGDGCTFELIeCSsKSIEFRVQILD 155
                        56668899*****.54444455599999********************99555577777777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd100171.72E-1379155No hitNo description
Gene3DG3DSA:2.40.330.101.3E-1283155IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-1287155IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.67391157IPR003340B3 DNA binding domain
PfamPF023628.2E-1092153IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MDSSTPCRRN HGGSSSKSHK HIYNGKAKEI PIHKTNSKHQ PDGTSTDEIL PLLEDKPLMH  60
FIVSKNQVRP PYQMFIQSRM YPLLPNAKVP VVLNCRKKNW HMLYYGDKEG RSRYFDSVGW  120
RKFVTDNELK IGDGCTFELI ECSSKSIEFR VQILDGDFPS ELLARDVTPG TSEAPIVID*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246420.13e-38PREDICTED: B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2G5CY088e-86A0A2G5CY08_AQUCA; Uncharacterized protein
STRINGAquca_034_00215.11e-86(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-07B3 family protein