PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G393600.2.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family GATA
Protein Properties Length: 257aa    MW: 29201.1 Da    PI: 9.4643
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G393600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-17201235135
               GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                        C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Aqcoe2G393600.2.p 201 CLHCLSEKTPQWRAGPLGPKTLCNACGVRYKSGRL 235
                        99*****************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.71E-13193247No hitNo description
SMARTSM004015.4E-15195249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.044195231IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.5E-13198233IPR013088Zinc finger, NHR/GATA-type
CDDcd002029.44E-14200250No hitNo description
PROSITE patternPS003440201226IPR000679Zinc finger, GATA-type
PfamPF003208.8E-15201235IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MTFSSLPLFL KKKNKNKSPR KLEVFLLSFF LMRMESLESA ALTFETLLDF PSDIDEEPDN  60
NDDDNNIKNP SLSLLTNNQQ INSAELTISH SDAHLHPFPV LEEELEWLNE NSFPDIDTFL  120
SVKPNSNNVA KDQSPVSVLG NSSSSLRHHP VQARSKRRRR RRSSFSDLIG QQWWVSYEPK  180
IKKKNVGATR MSMTSSSGRR CLHCLSEKTP QWRAGPLGPK TLCNACGVRY KSGRLLPEYR  240
PANSPTFSDI RYNDLM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1153161RSKRRRRRR
2155160KRRRRR
3155161KRRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00377DAPTransfer from AT3G24050Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010264014.15e-50PREDICTED: GATA transcription factor 1
TrEMBLA0A2G5CXZ61e-158A0A2G5CXZ6_AQUCA; Uncharacterized protein
STRINGAquca_034_00184.11e-159(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32890.13e-27GATA transcription factor 9