PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G398700.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

G2-like

Protein Properties

Length: 295aa MW: 32386.9 Da PI: 6.1021

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G398700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	109.1	2.3e-34	29	83	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Aqcoe2G398700.1.p 29 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 83 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.7E-33	26	84	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.944	26	86	IPR017930	Myb domain
SuperFamily	SSF46689	1.97E-17	29	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.9E-24	29	84	IPR006447	Myb domain, plants
Pfam	PF00249	8.8E-9	31	82	IPR001005	SANT/Myb domain
Pfam	PF14379	4.5E-27	128	174	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MYSSIHPLEC HEDLQGSLDA CVVLTSDPKP RLRWTAELHE RFVDAVTQLG GPDKATPKTI 60 MRTMGVKGLT LYHLKSHLQK YRLGKQSCKD FADSSKDASC IAESQGTESP SSSSSSRMMA 120 QDLNDGYQVT EALRVQMEVQ RRLHEQLEVQ RHLHLRIEAQ GKYLQSILEK ACKALNEQPV 180 ASVGLEEARQ ELSELAIKVT NDCLGAVPLD KLPSLAEIAA GCLDEKFLSN VQARIGDCSV 240 DSCLTSSGSP LSPMGVGMQS ATIKKRPRPM FASGESLAWE SDMRQDIEWI PTSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	8e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	8e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	8e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	8e-20	29	85	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	8e-20	29	85	2	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	264	268	KRPRP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241363.1	1e-168	PREDICTED: protein PHR1-LIKE 3-like isoform X1
Swissprot	Q8LAJ7	1e-113	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A2G5CXP0	0.0	A0A2G5CXP0_AQUCA; Uncharacterized protein
STRING	Aquca_034_00135.1	0.0	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-112	G2-like family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G398700.1.p

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]