PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G399200.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 409aa    MW: 45786.4 Da    PI: 4.8481
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G399200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.8e-12199250155
                        CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        +r++h ++Er+RR+++N+ +  Lr+l+P +   + ++ + a+i   A+e++++L+
  Aqcoe2G399200.1.p 199 QRMTHIAVERNRRKQMNEHLRVLRSLMPGS---YVQRGDQASIIGGAIEFVRELE 250
                        79****************************...9*****************9995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.4E-13197253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.41E-13197254No hitNo description
PROSITE profilePS5088815.428198249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.24E-17198270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-9199250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-9204255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048730.00351334398No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010377Biological Processguard cell fate commitment
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051782Biological Processnegative regulation of cell division
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MQRDEGNYST DLPGSYTGLD YSLDHQPPPL LMNKPRIGDI SGENNNIAMV DYMFNNPPQQ  60
QLSSSFGTST SLDKLNFADV MQFADFGPKL ALNQTKTTEE ENGIDPVYFL KFPVLNDRSQ  120
DQNLINAPLT GYNGNEFDEV SVGRNVTSLV EEEEPHVSEN NSMQLGFLGG TSLQKNPGSE  180
VKKRKRPRSV KTTEEVESQR MTHIAVERNR RKQMNEHLRV LRSLMPGSYV QRGDQASIIG  240
GAIEFVRELE QLLQCLESQK RRRLYGNGEA PRPMGDPNSL PIQQPQPPLF PPMPSPTDQI  300
KFGEYDDTGL LEETAENKSF LADVEVKVLG FDALIKILSR RRPGQLIKTI AALEDLQFNI  360
LHTNITTIEQ TVLYSFNVKV ASESRFTAED IASSVQQIFT FIHASSTL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1199210RMTHIAVERNRR
2259263KRRRL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (PubMed:17088607, PubMed:17183265, PubMed:17183267). Together with MYB88 and MYB124, ensures that stomata contain just two guard cells (GCs) by enforcing a single symmetric precursor cell division before stomatal maturity (PubMed:24571519). Together with SPCH and MUTE, regulates the stomata formation. Required to promote differentiation and morphogenesis of stomatal guard cells and to halt proliferative divisions in their immediate precursors. Mediates the formation of stomata (PubMed:17088607, PubMed:17183265, PubMed:17183267). Prevents histone H3K27me3 marks and derepresses stem cell gene expression (PubMed:24654956). {ECO:0000269|PubMed:17088607, ECO:0000269|PubMed:17183265, ECO:0000269|PubMed:17183267, ECO:0000269|PubMed:24571519, ECO:0000269|PubMed:24654956}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Inhibited by low relative humidity (LRH) via epigenetic CG methylation, thus leading to a reduced stomatal index. {ECO:0000269|PubMed:22442411}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021641449.10.0transcription factor FAMA-like isoform X2
RefseqXP_021641450.10.0transcription factor FAMA-like isoform X2
SwissprotQ56YJ81e-140FAMA_ARATH; Transcription factor FAMA
TrEMBLA0A2G5CYM60.0A0A2G5CYM6_AQUCA; Uncharacterized protein
STRINGAquca_034_00130.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24140.11e-129bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Matos JL, et al.
    Irreversible fate commitment in the Arabidopsis stomatal lineage requires a FAMA and RETINOBLASTOMA-RELATED module.
    Elife, 2015.
    [PMID:25303364]
  3. Chen L, et al.
    NRPB3, the third largest subunit of RNA polymerase II, is essential for stomatal patterning and differentiation in Arabidopsis.
    Development, 2016. 143(9): p. 1600-11
    [PMID:26989174]
  4. Lee JH,Jung JH,Park CM
    Light Inhibits COP1-Mediated Degradation of ICE Transcription Factors to Induce Stomatal Development in Arabidopsis.
    Plant Cell, 2017. 29(11): p. 2817-2830
    [PMID:29070509]
  5. Han X, et al.
    Jasmonate Negatively Regulates Stomatal Development in Arabidopsis Cotyledons.
    Plant Physiol., 2018. 176(4): p. 2871-2885
    [PMID:29496884]
  6. Li X,Yang R,Chen H
    The Arabidopsis thaliana Mediator subunit MED8 regulates plant immunity to Botrytis Cinerea through interacting with the basic helix-loop-helix (bHLH) transcription factor FAMA.
    PLoS ONE, 2018. 13(3): p. e0193458
    [PMID:29513733]