PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G414800.1.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

LBD

Protein Properties

Length: 404aa MW: 44476 Da PI: 8.266

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G414800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	90.6	1.9e-28	78	177	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilklqqqleqlk 91 +CaaCk+ + kC ++C lapyfpa+++k++ vhk+FG+ nv+k l +l+ + +a++slv+eA+++ +dP+ G +g ++++ q+ ++l Aqcoe2G414800.1.p 78 QCAACKHTKSKCDEKCKLAPYFPADKEKDYVEVHKIFGRCNVTKSLVNLSSRDdAATAIDSLVWEAQWWKEDPIGGPYGEYKRICQDNQRLI 169 6**********************************************66664899***************************999998 PP DUF260 92 aelallke 99 +e +l++ Aqcoe2G414800.1.p 170 TENMRLQQ 177 88776665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.25	77	179	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-25	78	173	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MTRNKATIEQ GDNGVSGDSH AGQGNVVIGV HGKRKVQRRT LKGAKEAITG IHGHNQGVNY 60 ATNSIDNGGS VGAHKKGQCA ACKHTKSKCD EKCKLAPYFP ADKEKDYVEV HKIFGRCNVT 120 KSLVNLSSRD DAATAIDSLV WEAQWWKEDP IGGPYGEYKR ICQDNQRLIT ENMRLQQLLL 180 RSMNVPTIPN RYMTHGLVIN HNDVGGLNMI DSGVNHPYNN VNHNNHDNSV NYAQNSSNGI 240 DRGVLIDDGR FDDVLGNRSL NFGAQPYTIN VPPTQEQQPT GVFQGADGSL NDITNATGSI 300 HDIYSHYISF PRQPNCHFVG SLCILCSVVT IRALLSSLTS EFCGRISDYD WSMWIIVVTQ 360 ILTIVIGSSA TSFRSWFTLV KNLKYNPIGK ALKDETRTLI NSN*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MTRNKATIEQ GDNGVSGDSH AGQGNVVIGV HGKRKVQRRT LKGAKEAITG IHGHNQGVNY  60
ATNSIDNGGS VGAHKKGQCA ACKHTKSKCD EKCKLAPYFP ADKEKDYVEV HKIFGRCNVT  120
KSLVNLSSRD DAATAIDSLV WEAQWWKEDP IGGPYGEYKR ICQDNQRLIT ENMRLQQLLL  180
RSMNVPTIPN RYMTHGLVIN HNDVGGLNMI DSGVNHPYNN VNHNNHDNSV NYAQNSSNGI  240
DRGVLIDDGR FDDVLGNRSL NFGAQPYTIN VPPTQEQQPT GVFQGADGSL NDITNATGSI  300
HDIYSHYISF PRQPNCHFVG SLCILCSVVT IRALLSSLTS EFCGRISDYD WSMWIIVVTQ  360
ILTIVIGSSA TSFRSWFTLV KNLKYNPIGK ALKDETRTLI NSN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-26	LOB domain-containing protein 2

Link Out ? help Back to Top
Phytozome	Aqcoe2G414800.1.p