PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe2G428300.1.p
Organism
Aquilegia coerulea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family AP2
Protein Properties Length: 723aa    MW: 79069.5 Da    PI: 6.4156
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe2G428300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.49.5e-15297356155
                AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Aqcoe2G428300.1.p 297 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 356
                        57*******************666664478446*************************98 PP
2AP246.68.3e-15399450155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Aqcoe2G428300.1.p 399 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 450
                        57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.15E-23297366No hitNo description
PfamPF008471.1E-11297356IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-17297366IPR016177DNA-binding domain
PROSITE profilePS5103219.164298364IPR001471AP2/ERF domain
SMARTSM003801.2E-29298370IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15298365IPR001471AP2/ERF domain
PRINTSPR003673.9E-6299310IPR001471AP2/ERF domain
CDDcd000186.47E-25399460No hitNo description
SuperFamilySSF541711.11E-17399460IPR016177DNA-binding domain
PfamPF008471.0E-9399450IPR001471AP2/ERF domain
SMARTSM003801.5E-33400464IPR001471AP2/ERF domain
PROSITE profilePS5103219.045400458IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-18400459IPR001471AP2/ERF domain
PRINTSPR003673.9E-6440460IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 723 aa     Download sequence    Send to blast
MASMNNWLAF SLSPQELPSQ THNHESSNVS RLGFNSDEIS GTDVSGDCFD LASDSTDPSL  60
NLPSMRPDGP FGILEAFNRN HHQPHDWNVK DLSMNCDSNY KTSSEYSMLM DGSSNNHQHL  120
DLEGVPKLED FLGNSFSDHD QQKLHACSTM TASYDNSGSD YMFSNCSLQL PAVTSNNTNG  180
GSGGGGGSTG ASVNNNSIGL SMIKTWLRNQ PAPPPQQAVA TEQQHQPENK TNSAQTLSLS  240
MSTGSQSSSP LPLLTTGAAG ESSSTDNKQK TTPLDSQTGA IEATPRKSID TFGQRTSIYR  300
GVTRHRWTGR YEAHLWDNSC RREGQTRKGR QVYLGGYDKE EKAARAYDLA ALKYWGSTTT  360
TNFPISTYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH GRWQARIGRV  420
AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVNSIIES STLPIGGAAK  480
RLKEAEQIET SVAVRRTEEE NLTAQLTDGI NNYGAHHHAG WPTISFQQAQ PLSMHYPYTQ  540
QRGWCKQEQD VTPHTYQDLH QLQLGSTHNF FQPNVLHNLM SLDSSSMEHS TGSNSVIYSS  600
GGGSGSGGSN CSYQGVVSGN HGGYALPMGM MIGDQNNQGS SFGENDVKQL GYDGILGSTD  660
PYRNSYYLSQ QSPPQAIAKT NGYDQGSAYN NWMPTAVQAL TPRTNNLGVC HAVPAFSVWN  720
DT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010241511.10.0PREDICTED: AP2-like ethylene-responsive transcription factor BBM1
SwissprotQ8LSN21e-147BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2
TrEMBLA0A2G5CET20.0A0A2G5CET2_AQUCA; Uncharacterized protein
STRINGAquca_058_00109.10.0(Aquilegia coerulea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.11e-130AP2 family protein