PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Aqcoe2G432800.2.p

Organism

Aquilegia coerulea

Taxonomic ID

218851

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia

Family

FAR1

Protein Properties

Length: 210aa MW: 23988.2 Da PI: 7.9752

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aqcoe2G432800.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.6	3.8e-27	48	136	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY+eYA+++GF r+ +s++s+r++++++r++ C+keg++ +++k ++ + r+r+++r gC a++ vkk+k gkw+vtk+ +eHnH+++ Aqcoe2G432800.2.p 48 FYDEYARRLGFVGRIVSSRRSERDRSFISRKLACNKEGYNLSSRKIDRVRIRKRQSQREGCMAMMLVKKQKPGKWVVTKFIKEHNHPMV 136 9****************************************99999999*********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-24	48	136	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MDLEVRASEG AGTIEDSTGG ELTVCDGDAI QEPYVGMVFE TEDAAKVFYD EYARRLGFVG 60 RIVSSRRSER DRSFISRKLA CNKEGYNLSS RKIDRVRIRK RQSQREGCMA MMLVKKQKPG 120 KWVVTKFIKE HNHPMVVSSN KERPTPDEKD KKIQELSTEL NRANRRLAAC QEQLNVFMKL 180 VEDHTQHLTG TVAEIVHNVR EIDSEEQEL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC253894	0.0	AC253894.1 Aquilegia coerulea clone COL02-M12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_026389315.1	1e-107	protein FAR-RED IMPAIRED RESPONSE 1-like
Swissprot	Q9SZL8	3e-21	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2G5CEL9	1e-154	A0A2G5CEL9_AQUCA; Uncharacterized protein (Fragment)
STRING	Aquca_058_00067.1	1e-155	(Aquilegia coerulea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43280.1	2e-62	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Aqcoe2G432800.2.p

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]